Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph scatter-gatk-wf-with-interval.cwl

https://github.com/arvados/arvados-tutorial.git

Path: WGS-processing/cwl/helper/scatter-gatk-wf-with-interval.cwl

Branch/Commit ID: 36de0d12e1cc88d0fd7d6b401df6c6e403f8c809
workflow graph kmer_build_tree

https://github.com/ncbi-gpipe/pgap.git

Path: task_types/tt_kmer_build_tree.cwl

Branch/Commit ID: 71e3a42eadc007b66ef4689086530dfc3123d32f
workflow graph WGS processing workflow for single sample

https://github.com/arvados/arvados-tutorial.git

Path: WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl

Branch/Commit ID: e3b01c795c65bbfa0c09f9e7b8ffb80a950746d7
workflow graph exome alignment and germline variant detection, with optitype for HLA typing

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/germline_exome_hla_typing.cwl

Branch/Commit ID: 9161ef43f7bf0e22b365fde9ec92edcb8601798e
workflow graph Scattered variant calling workflow

https://github.com/arvados/arvados-tutorial.git

Path: WGS-processing/cwl/helper/scatter-gatk-wf-with-interval.cwl

Branch/Commit ID: ef89d0aabd706c59168537f69742e570373fdd84
workflow graph wgs alignment and germline variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/germline_wgs.cwl

Branch/Commit ID: 9161ef43f7bf0e22b365fde9ec92edcb8601798e
workflow graph Variant calling workflow for given interval

https://github.com/arvados/arvados-tutorial.git

Path: WGS-processing/cwl/helper/gatk-wf-with-interval.cwl

Branch/Commit ID: ef89d0aabd706c59168537f69742e570373fdd84
workflow graph Immunotherapy Workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/immuno.cwl

Branch/Commit ID: 2e298960837739717ec2928a99c5d811183012e6
workflow graph somatic_exome: exome alignment and somatic variant detection

somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/somatic_exome.cwl

Branch/Commit ID: 9161ef43f7bf0e22b365fde9ec92edcb8601798e
workflow graph fastq2fasta.cwl

https://github.com/hpobio-lab/viral-analysis.git

Path: cwl/fastq2fasta/fastq2fasta.cwl

Branch/Commit ID: 24465ba219711f2828e633d25d9f183e0f0eaccd