Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph foreign_screening.cwl

https://github.com/ncbi/pgap.git

Path: vecscreen/foreign_screening.cwl

Branch/Commit ID: ef266744578e2dcbce57c110c6fa3b9eee91e316
workflow graph EMG pipeline v3.0 (single end version)

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3.cwl

Branch/Commit ID: 0cf06f13527b380d21d0f335aaea3e564094ed8f
workflow graph exomeseq.cwl#exomeseq-02-variantdiscovery.cwl

https://github.com/duke-gcb/bespin-cwl.git

Path: packed/exomeseq.cwl

Branch/Commit ID: ef08cb00bd55b4c712645d171dbc691e01ed6165

Packed ID: exomeseq-02-variantdiscovery.cwl
workflow graph scatter2.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/scatter2.cwl

Branch/Commit ID: 250e6849c8c1dc3ae15f11ae1355ef3486f87263
workflow graph exome alignment and germline variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/germline_exome.cwl

Branch/Commit ID: 641083e9ed933d388f36fa04c00c20a810599e94
workflow graph wf.cwl

https://github.com/ResearchObject/runcrate.git

Path: cwl/multisource/wf.cwl

Branch/Commit ID: 528bbd2be7221af4dc44d443e6e490df6e9bcf1d
workflow graph wf_clipseqcore_se_1barcode.cwl

https://github.com/yeolab/eclip.git

Path: cwl/wf_clipseqcore_se_1barcode.cwl

Branch/Commit ID: c0fffc4979a92371dc0667a03e3d957bf7f77600
workflow graph gcaccess_from_list

https://github.com/ncbi/pgap.git

Path: task_types/tt_gcaccess_from_list.cwl

Branch/Commit ID: b36faf882851f4bdd926f8c64435cf6f5a3daccd
workflow graph Single-cell Multiome ATAC and RNA-Seq Alignment

Single-cell Multiome ATAC and RNA-Seq Alignment Runs Cell Ranger ARC Count to quantifies chromatin accessibility and gene expression from a single-cell Multiome ATAC and RNA-Seq library

 https://github.com/barski-lab/sc-seq-analysis.git

Path: workflows/sc-multiome-align-wf.cwl

Branch/Commit ID: e70b7fab45e4bd2abfb7dab2b8b1f79ce904ac69
workflow graph wf_trim_and_map_pe.cwl

This workflow takes in appropriate trimming params and demultiplexed reads, and performs the following steps in order: trimx1, trimx2, fastq-sort, filter repeat elements, fastq-sort, genomic mapping, sort alignment, index alignment, namesort, PCR dedup, sort alignment, index alignment

https://github.com/yeolab/eclip.git

Path: cwl/wf_trim_and_map_pe.cwl

Branch/Commit ID: c0fffc4979a92371dc0667a03e3d957bf7f77600