Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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exome alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: 3bb0693076adc1543079a6b136c74906ad546ac6 |
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Detect Variants workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: 3bb0693076adc1543079a6b136c74906ad546ac6 |
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exome alignment and germline variant detection, with optitype for HLA typing
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_exome_hla_typing.cwl Branch/Commit ID: 74647cc0f1abac4ee22950cfa89c44cf2ca3cffd |
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scatter-gatk-wf-with-interval.cwl
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https://github.com/arvados/arvados-tutorial.git
Path: WGS-processing/cwl/helper/scatter-gatk-wf-with-interval.cwl Branch/Commit ID: 36de0d12e1cc88d0fd7d6b401df6c6e403f8c809 |
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kmer_build_tree
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https://github.com/ncbi-gpipe/pgap.git
Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: 71e3a42eadc007b66ef4689086530dfc3123d32f |
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WGS processing workflow for single sample
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https://github.com/arvados/arvados-tutorial.git
Path: WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl Branch/Commit ID: e3b01c795c65bbfa0c09f9e7b8ffb80a950746d7 |
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exome alignment and germline variant detection, with optitype for HLA typing
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_exome_hla_typing.cwl Branch/Commit ID: 9161ef43f7bf0e22b365fde9ec92edcb8601798e |
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Scattered variant calling workflow
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https://github.com/arvados/arvados-tutorial.git
Path: WGS-processing/cwl/helper/scatter-gatk-wf-with-interval.cwl Branch/Commit ID: ef89d0aabd706c59168537f69742e570373fdd84 |
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wgs alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_wgs.cwl Branch/Commit ID: 9161ef43f7bf0e22b365fde9ec92edcb8601798e |
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Variant calling workflow for given interval
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https://github.com/arvados/arvados-tutorial.git
Path: WGS-processing/cwl/helper/gatk-wf-with-interval.cwl Branch/Commit ID: ef89d0aabd706c59168537f69742e570373fdd84 |
