Explore Workflows

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/samtools_view_sam2bam.cwl

Branch/Commit ID: 1.0.6

Workflow makes indices for [STAR](https://github.com/alexdobin/STAR) v2.5.3a (03/17/2017) PMID: [23104886](https://www.ncbi.nlm.nih.gov/pubmed/23104886). It performs the following steps: 1. Runs `STAR --runMode genomeGenerate` to generate indices, based on [FASTA](http://zhanglab.ccmb.med.umich.edu/FASTA/) and [GTF](http://mblab.wustl.edu/GTF2.html) input files, returns results as an array of files 2. Transforms array of files into [Direcotry](http://www.commonwl.org/v1.0/CommandLineTool.html#Directory) data type 3. Separates *chrNameLength.txt* file as an output

https://github.com/datirium/workflows.git

Path: workflows/star-index.cwl

Branch/Commit ID: dda9e6e06a656b7b3fa7504156474b962fe3953c

This workflow QC, alignment and quantification from TPMCalculator for not spliced genomes

https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/RNA-Seq/rnaseq-alignment-quantification_nosplice.cwl

Branch/Commit ID: master

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3-paired.cwl

Branch/Commit ID: 135976d

https://github.com/farahzkhan/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: master

https://github.com/YeoLab/eclip.git

Path: cwl/wf_get_peaks_trim_partial_scatter_se.cwl

Branch/Commit ID: master

https://github.com/hacchy1983/imputation-server-jp.git

Path: Workflows/beagle-imputation-scatter-region.cwl

Branch/Commit ID: main

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/dnaseq/etl.cwl

Branch/Commit ID: 1.1

https://github.com/mskcc/argos-cwl.git

Path: modules/pair/variant-calling-pair.cwl

Branch/Commit ID: master

https://github.com/mr-c/cwltests.git

Path: cwl/workflow.cwl

Branch/Commit ID: master