Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph status_postgres.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/fastq_readgroup_stats/status_postgres.cwl

Branch/Commit ID: 3cd06184444bb85e9773a3e7dc548c6dd3bdaccb
workflow graph pindel parallel workflow

https://github.com/mnneveau/cancer-genomics-workflow.git

Path: pindel/workflow.cwl

Branch/Commit ID: 5a67e91727c8eb44afff27f9e4774eafef579c58
workflow graph 02-trim-pe.cwl

RNA-seq 02 trimming - reads: PE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/02-trim-pe.cwl

Branch/Commit ID: 6e68bda2cb45e8dc8e4d067c4220d65acfa53065
workflow graph rRNA_selection.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/rRNA_selection.cwl

Branch/Commit ID: d4e5e533ee6dc93bfaf1c4bbb2ab40812a8f4792
workflow graph functional analysis prediction with InterProScan

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/functional_analysis.cwl

Branch/Commit ID: c1f8b22dc4da88c998cb00f4b2bebdff8c3632d7
workflow graph workflow.cwl

https://github.com/screx/cwl-tutorial.git

Path: bioinformatics/tools/workflow.cwl

Branch/Commit ID: ae08e989af8634697b93dc565049370907381f90
workflow graph 01-qc-pe.cwl

RNA-seq 01 QC - reads: PE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/01-qc-pe.cwl

Branch/Commit ID: 6e68bda2cb45e8dc8e4d067c4220d65acfa53065
workflow graph rRNA_selection.cwl

https://github.com/farahzkhan/ebi-metagenomics-cwl.git

Path: tools/rRNA_selection.cwl

Branch/Commit ID: bcfe5f9affd23d52467f69b4b21d1098f0ca95d7
workflow graph biowardrobe_chipseq_se.cwl

Current workflow is used to run CHIP-Seq basic analysis with single-end input FASTQ file. In outputs it returns coordinate sorted BAM file alongside with index BAI file, quality statistics of the input FASTQ file, reads coverage in a form of BigWig file, peaks calling data in a form of narrowPeak or broadPeak files.

https://github.com/Barski-lab/ga4gh_challenge.git

Path: biowardrobe_chipseq_se.cwl

Branch/Commit ID: 77330fac31568e2c3e080ea771df813c039aefe6
workflow graph main-SGDP-recall.cwl

https://github.com/bcbio/bcbio_validation_workflows.git

Path: SGDP-recall-CGC/SGDP-recall-cgc/main-SGDP-recall.cwl

Branch/Commit ID: c4592973b1580e3ff44cb697f64b12345b91e6f5