Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Compute library complexity
This workflow compute library complexity |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/File-formats/bedtools-bam-pbc.cwl Branch/Commit ID: b5a440939ac6022ee81aeeb0dd7daf3983228a61 |
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PGAP Pipeline
PGAP pipeline for external usage, powered via containers |
https://github.com/ncbi/pgap.git
Path: wf_common.cwl Branch/Commit ID: d40ef1462a4c210be3184609dbb3467ff61fc017 |
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STAR-Alignment-PE
This workflow aligns the fastq files using STAR for no spliced genomes |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/Alignments/star-alignment-nosplice.cwl Branch/Commit ID: b5a440939ac6022ee81aeeb0dd7daf3983228a61 |
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BAM to BEDPE
Comvert BAM to BEDPE and compress the output |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/File-formats/bamtobedpe-gzip.cwl Branch/Commit ID: f37e1346f1d48fe9f2b9282e37997a2e3ffed7e2 |
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kmer_cache_retrieve
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: 8c21035bff3cbffccf5682bd0357a6d71f3bdb81 |
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protein_extract
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https://github.com/ncbi/pgap.git
Path: progs/protein_extract.cwl Branch/Commit ID: 8c21035bff3cbffccf5682bd0357a6d71f3bdb81 |
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workflow_input_format_expr_v1_1.cwl
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https://github.com/common-workflow-language/cwl-utils.git
Path: testdata/workflow_input_format_expr_v1_1.cwl Branch/Commit ID: 513bf79c9e3ba98306006a87165de18bac7c04ee |
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pipeline.cwl
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https://github.com/hubmapconsortium/azimuth-annotate.git
Path: pipeline.cwl Branch/Commit ID: 86b0951cf0be54ad22e95948e9bc778d12936860 |
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conflict-wf.cwl#collision
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/conflict-wf.cwl Branch/Commit ID: 4bf61c8a3d519eefd8b9271af73974bec62535ba Packed ID: collision |
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mut.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/mut.cwl Branch/Commit ID: 048eb55aefd8d71d161fbc89ec0e888b8bfa0aa1 |
