Explore Workflows

https://github.com/ncbi/pgap.git

Path: task_types/tt_hmmsearch_wnode.cwl

Branch/Commit ID: 8aa85573e659ef67163537d6811afdddcfad53dc

The workflow is used to run CHIP-Seq basic analysis with single-end input FASTQ file. In outputs it returns coordinate sorted BAM file alongside with index BAI file, quality statistics of the input FASTQ file, reads coverage in a form of bigWig file, peaks calling data in a form of narrowPeak or broadPeak files.

https://github.com/Barski-lab/ga4gh_challenge.git

Path: biowardrobe_chipseq_se.cwl

Branch/Commit ID: 8b0bd561a43ee35d7bc1a383de2cbbd1277f6e00

https://github.com/curoverse/l7g.git

Path: cwl-version/clean/cwl/tiling_clean_gvcf.cwl

Branch/Commit ID: 4765da6828edaa70875c70584673cdaaead72c7b

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/count-lines1-wf.cwl

Branch/Commit ID: ca8e6661b5cab1f017e5bc4024650722dae4d50b

https://github.com/kids-first/kf-alignment-workflow.git

Path: dev/pilot-run/worklflows/kfdrc_alignment_pipeline.cwl

Branch/Commit ID: a1cd86214398947c57529677ec10f97b606b7de2

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/extract_capture_kit.cwl

Branch/Commit ID: a57b8f0d8708078e87f13297e065d72db10e38a0

https://github.com/ncbi/pgap.git

Path: progs/protein_extract.cwl

Branch/Commit ID: 8aa85573e659ef67163537d6811afdddcfad53dc

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/default-dir5.cwl

Branch/Commit ID: 49cd284a8fc7884de763573075d3e1d6a4c1ffdd

https://github.com/genome/cancer-genomics-workflow.git

Path: rnaseq/bam_to_trimmed_fastq_and_hisat_alignments.cwl

Branch/Commit ID: eb565eac07209017b12ed79057b40cbf44fb6a0d

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/wffail.cwl

Branch/Commit ID: 49cd284a8fc7884de763573075d3e1d6a4c1ffdd