Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Bisulfite alignment and QC
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/bisulfite.cwl Branch/Commit ID: 67f56d3b9c70ad56019ed8aa8d50a128e02be43b |
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bam to trimmed fastqs and biscuit alignments
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl Branch/Commit ID: 3bebaf9b70331de9f4845e2223c55082f5a812fb |
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Detect DoCM variants
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/docm_germline.cwl Branch/Commit ID: e0b3c76e38630fb6234414b5adebfb6a4fb23117 |
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Running cellranger count and lineage inference
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/single_cell_rnaseq.cwl Branch/Commit ID: a670f323e77e02d9b77be9a13d73d5276dd3676c |
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Bisulfite QC tools
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bisulfite_qc.cwl Branch/Commit ID: a670f323e77e02d9b77be9a13d73d5276dd3676c |
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count-lines5-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines5-wf.cwl Branch/Commit ID: 4a31f2a1c1163492ae37bbc748a299e8318c462c |
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mut3.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/mut3.cwl Branch/Commit ID: 445f6b3a214f0c48317b25f7af278ae919ce5403 |
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QuantSeq 3' FWD, FWD-UMI or REV for single-read mRNA-Seq data
### QuantSeq 3' FWD, FWD-UMI or REV for single-read mRNA-Seq data |
https://github.com/datirium/workflows.git
Path: workflows/trim-quantseq-mrnaseq-se-strand-specific.cwl Branch/Commit ID: b4d578c2ba4713a5a22163d9f8c7105acda1f22e |
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1st-workflow.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/1st-workflow.cwl Branch/Commit ID: 31aa094dce60cbb176229d6b918bfd5ae09c0390 |
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count-lines10-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines10-wf.cwl Branch/Commit ID: a858bb4db58ef2df17b4856294ad7904643c5c6e |
