Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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PGAP Pipeline, simple user input, PGAPX-134
PGAP pipeline for external usage, powered via containers, simple user input: (FASTA + yaml only, no template) |
https://github.com/ncbi/pgap.git
Path: pgap.cwl Branch/Commit ID: 55b6ee46b0c9fb1c9949cd0888b388c6f11b73b1 |
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03-map-pe.cwl
ATAC-seq 03 mapping - reads: PE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/03-map-pe.cwl Branch/Commit ID: 81555a89cc2d16bd3ab131a6685a44b44f08f927 |
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record-in-secondaryFiles-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/record-in-secondaryFiles-wf.cwl Branch/Commit ID: 31bda22357987171f02ae6513fcc26e011e6afed |
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default-wf5.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/default-wf5.cwl Branch/Commit ID: 20bec583996f86de518feb51574ff6efc8784f49 |
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xenbase-fastq-bowtie-bigwig-se-pe.cwl
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https://github.com/Barski-lab/workflows.git
Path: subworkflows/xenbase-fastq-bowtie-bigwig-se-pe.cwl Branch/Commit ID: 744117c1332359de1ed0d2c3c4f314ffcb6797d3 |
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align_merge_sas
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https://github.com/ncbi/pgap.git
Path: task_types/tt_align_merge_sas.cwl Branch/Commit ID: 5282690e0f634a5f83107ba878fe62cbbb347408 |
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LHCb MC workflow
This workflow is composed of 2 main steps that should generate 2 types of jobs: * MCSimulation (CommandLineTool): Gauss execution * MCReconstruction (Workflow): Boole, Moore, Brunel and DaVinci executions based on Gauss outputs |
https://github.com/aldbr/dirac-cwl-proto.git
Path: test/workflows/lhcb/description.cwl Branch/Commit ID: 0a7ab0154feadd641e17fdcabf3f0b83105fd4df |
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assemble.cwl
Assemble a set of reads using SKESA |
https://github.com/ncbi/pgap.git
Path: assemble.cwl Branch/Commit ID: 55b6ee46b0c9fb1c9949cd0888b388c6f11b73b1 |
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taxcheck.cwl
Perform taxonomic identification tasks on an input genome |
https://github.com/ncbi/pgap.git
Path: taxcheck.cwl Branch/Commit ID: 008a090fb1938fbb393494ac8fcb219f0d9f5295 |
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search.cwl#main
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/search.cwl Branch/Commit ID: a0f7d43bbc706af2a844be93fc19b2e4e4da626c Packed ID: main |
