Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph QIIME2 Step 1 paired end sequences

QIIME2 Import and Demux Step 1 paired end sequences

https://github.com/duke-gcb/bespin-cwl.git

Path: packed/qiime2-step1-import-demux-paired.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: main
workflow graph PerformanceSummaryGenome_v0_1_0.cwl

https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git

Path: janis_pipelines/wgs_somatic/cwl/tools/PerformanceSummaryGenome_v0_1_0.cwl

Branch/Commit ID: master
workflow graph Variant calling workflow for given interval

https://github.com/arvados/arvados-tutorial.git

Path: WGS-processing/cwl/helper/gatk-wf-with-interval.cwl

Branch/Commit ID: main
workflow graph tRNA_selection.cwl

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: 71d9c83
workflow graph l1a_workflow.cwl

https://github.com/anilnatha/sounder-sips-application.git

Path: cwl/l1a_workflow.cwl

Branch/Commit ID: main
workflow graph tRNA_selection.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: ef3c7b2
workflow graph 03-map-se-blacklist-removal.cwl

ATAC-seq 03 mapping - reads: SE - blacklist removal

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/03-map-se-blacklist-removal.cwl

Branch/Commit ID: master
workflow graph Transcripts annotation workflow

https://github.com/mscheremetjew/workflow-is-cwl.git

Path: workflows/TranscriptsAnnotation-wf.cwl

Branch/Commit ID: master
workflow graph fetch-proteins.cwl

Filter accessions and retrieve their sequences.

 https://github.com/psafont/gluetools-cwl.git

Path: workflows/fetch-proteins.cwl

Branch/Commit ID: master
workflow graph preprocess_vcf.cwl

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/icgc-tcga-pancancer/pcawg-snv-indel-annotation.git

Path: preprocess_vcf.cwl

Branch/Commit ID: master