Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
scRNA-seq pipeline using Salmon and Alevin
|
https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: pipeline.cwl Branch/Commit ID: 536d6ed |
|
|
|
msa.cwl
|
https://github.com/CERIT-SC/fireprot.git
Path: msa.cwl Branch/Commit ID: master |
|
|
|
BD Rhapsody™ Targeted Analysis Pipeline
The BD Rhapsody™ assays are used to create sequencing libraries from single cell transcriptomes. After sequencing, the analysis pipeline takes the FASTQ files and a reference file for gene alignment. The pipeline generates molecular counts per cell, read counts per cell, metrics, and an alignment file. |
https://github.com/longbow0/cwl.git
Path: v1.8/rhapsody_targeted_1.8.cwl Branch/Commit ID: master Packed ID: main |
|
|
|
Unaligned BAM to BQSR and VCF
|
https://github.com/genome/cancer-genomics-workflow.git
Path: unaligned_bam_to_bqsr/workflow.cwl Branch/Commit ID: toil_compatibility |
|
|
|
host_process.cwl
|
https://github.com/azzaea/tsts.git
Path: cwl/host_process.cwl Branch/Commit ID: master |
|
|
|
Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pvacseq.cwl Branch/Commit ID: master |
|
|
|
EMG assembly for paired end Illumina
|
https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v4-assembly-metaSPAdes.cwl Branch/Commit ID: master |
|
|
|
count-lines17-wf.cwl
|
https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/count-lines17-wf.cwl Branch/Commit ID: main |
|
|
|
mut3.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/mut3.cwl Branch/Commit ID: a21728aa0e2dd0ffc1be39fdbf9bc76029e90c66 |
|
|
|
ocrevaluation-performance-test-files-wf-pack.cwl#ocrevaluation-performance-wf.cwl
|
https://github.com/KBNLresearch/ochre.git
Path: ochre/cwl/ocrevaluation-performance-test-files-wf-pack.cwl Branch/Commit ID: master Packed ID: ocrevaluation-performance-wf.cwl |
