Explore Workflows

https://github.com/ncbi/pgap.git

Path: task_types/tt_fscr_calls_pass1.cwl

Branch/Commit ID: d40ef1462a4c210be3184609dbb3467ff61fc017

ATAC-seq 03 mapping - reads: PE

https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/03-map-pe.cwl

Branch/Commit ID: 6e68bda2cb45e8dc8e4d067c4220d65acfa53065

ATAC-seq pipeline - reads: PE - with blacklist removal

https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/pipeline-pe-blacklist-removal.cwl

Branch/Commit ID: 7696e7eb27a9251fba53ef4ccacc84cc8f8b0685

https://github.com/CompEpigen/ChIPseq_workflows.git

Path: CWL/workflows/CUTnRUN.cwl

Branch/Commit ID: 6a2df36b7c019ecb91bd1b7ed9eb7c62ccbe112d

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: pipeline.cwl

Branch/Commit ID: 41c6490b9249bb793428a62fcbfe6006f20e2c06

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/qc_exome_no_verify_bam.cwl

Branch/Commit ID: 31a179d7a2f2ac86bfd7fcc4dc79832c3739ae76

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines12-wf.cwl

Branch/Commit ID: e62a8406b448220969ee172699f61c5ca379d60c

https://github.com/common-workflow-lab/wdl-cwl-translator.git

Path: wdl2cwl/tests/cwl_files/struct_output.cwl

Branch/Commit ID: 95fb3e295823bd124b017b6c063d224fbd28457d

Reverse the lines in a document, then sort those lines.

https://github.com/Duke-GCB/calrissian.git

Path: input-data/revsort-single.cwl

Branch/Commit ID: 1a87a2e9172cda417304e7c8e424799fa19bc06f

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/scatterfail.cwl

Branch/Commit ID: ca7f7687b39611c295dc9d21c542214f2b462093