Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph STAR-Alignment-PE-circRNA

This workflow aligns the fastq files using STAR for paired-end samples to be used in circRNA pipeline

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Alignments/star-alignment-circRNA-default.cwl

Branch/Commit ID: 590ed6c9803ba670411c48650bc24deef7863925
workflow graph BuildIndices.cwl

https://github.com/common-workflow-lab/wdl-cwl-translator.git

Path: wdl2cwl/tests/cwl_files/BuildIndices.cwl

Branch/Commit ID: 58de4cb0155834b7707beb7a7a40fa0f8d9a445d
workflow graph linc_target.cwl

https://git.astron.nl/RD/LINC.git

Path: workflows/linc_target.cwl

Branch/Commit ID: 08d75f9f3640d570a9767c33e84ebbc12547207e
workflow graph taxonomy_check_16S

https://github.com/ncbi/pgap.git

Path: task_types/tt_taxonomy_check_16S.cwl

Branch/Commit ID: 2c4c3c5e30e751f4793a5b015bbc5960ef6b03da
workflow graph count-lines1-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/count-lines1-wf.cwl

Branch/Commit ID: a21728aa0e2dd0ffc1be39fdbf9bc76029e90c66
workflow graph tt_kmer_top_n.cwl

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_top_n.cwl

Branch/Commit ID: 2c4c3c5e30e751f4793a5b015bbc5960ef6b03da
workflow graph count-lines1-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/count-lines1-wf.cwl

Branch/Commit ID: f1661438c07671b4738b1cad88c58b80541a76af
workflow graph mut.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/mut.cwl

Branch/Commit ID: 1bf74499ca1c4a5f98e7cffb0ad4aa89aa98cb9e
workflow graph contaminant_cleanup

This workflow detect and remove contamination from a DNA fasta file

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Contamination/fastq-contaminant-cleanup.cwl

Branch/Commit ID: 590ed6c9803ba670411c48650bc24deef7863925
workflow graph scatterfail.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/scatterfail.cwl

Branch/Commit ID: 250e6849c8c1dc3ae15f11ae1355ef3486f87263