Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	exome alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/germline_exome_gvcf.cwl Branch/Commit ID: 97572e3a088d79f6a4166385f79e79ea77b11470
	adapter for sequence_align_and_tag Some workflow engines won't stage files in our nested structure, so parse it out here	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: a59a803e1809a8fbfabca6b8962a8ad66dd01f1d
	align_sort_sa	https://github.com/ncbi/pgap.git Path: task_types/tt_align_sort_sa.cwl Branch/Commit ID: f6950321e5c9ee733ad68a273d2ad8e802a6b982
	varscan somatic workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: 891c996dbd23d8154ec7609a56da3de841ae124c
	STAR-RNA-Seq alignment and transcript/gene abundance workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/rnaseq_star_fusion.cwl Branch/Commit ID: 77ec4f26eb14ed82481828bd9f6ef659cfd8b40f
	workflow.cwl	https://github.com/NAL-i5K/Organism_Onboarding.git Path: flow_dispatch/2blat/workflow.cwl Branch/Commit ID: 677d79c721ad5f7a7e09b693d7f3fe2da70826e2
	env-wf3.cwl	https://github.com/common-workflow-language/cwl-v1.1.git Path: tests/env-wf3.cwl Branch/Commit ID: 0e37d46e793e72b7c16b5ec03e22cb3ce1f55ba3
	bact_get_kmer_reference	https://github.com/ncbi/pgap.git Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: f6950321e5c9ee733ad68a273d2ad8e802a6b982
	count-lines1-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/count-lines1-wf.cwl Branch/Commit ID: e835bc0487fe42fb330b6222c9be65d18dd81ec9
	Subsample BAM file creating a tagAlign and pseudoreplicates This workflow creates a subsample from a BAM file creating a tagAlign and pseudoreplicates	https://github.com/ncbi/cwl-ngs-workflows-cbb.git Path: workflows/File-formats/subample-pseudoreplicates.cwl Branch/Commit ID: 527251ebb77750d02dcc9a370d978a153fc9328f