Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Trim and reformat reads (single and paired end version)

https://github.com/FarahZKhan/ebi-metagenomics-cwl.git

Path: workflows/trim_and_reformat_reads.cwl

Branch/Commit ID: bcfe5f9affd23d52467f69b4b21d1098f0ca95d7
workflow graph Find Marker Alignments

https://github.com/ncbi-gpipe/pgap.git

Path: clade_assign/wf_find_marker_alignments.cwl

Branch/Commit ID: 71e3a42eadc007b66ef4689086530dfc3123d32f
workflow graph Assign Clade

https://github.com/ncbi-gpipe/pgap.git

Path: clade_assign/wf_assign_clade.cwl

Branch/Commit ID: 71e3a42eadc007b66ef4689086530dfc3123d32f
workflow graph Unaligned BAM to BQSR and VCF

https://github.com/genome/cancer-genomics-workflow.git

Path: unaligned_bam_to_bqsr/workflow.cwl

Branch/Commit ID: ab3cc1f460146c60d7de417508f0c1ea70506e6a
workflow graph Per-chromosome pindel

https://github.com/mnneveau/cancer-genomics-workflow.git

Path: pindel/pindel_cat.cwl

Branch/Commit ID: 5a67e91727c8eb44afff27f9e4774eafef579c58
workflow graph TAP 0.9

todo

 https://github.com/MG-RAST/amplicon.git

Path: CWL/Workflows/relabel-and-merge.cwl

Branch/Commit ID: d86dea59873aecc378c5cff64f93cd72b46b59bd
workflow graph kfdrc_bwamem_subwf.cwl

https://github.com/kids-first/kf-alignment-workflow.git

Path: workflows/kfdrc_bwamem_subwf.cwl

Branch/Commit ID: edd5a6b2df3b4d0503e09fb17f5f1ef278594af3
workflow graph wf-alignment.cwl

https://github.com/bcbio/bcbio_validation_workflows.git

Path: NA24385-sv/NA24385-sv-workflow/wf-alignment.cwl

Branch/Commit ID: c4592973b1580e3ff44cb697f64b12345b91e6f5
workflow graph Detect DoCM variants

https://github.com/genome/cancer-genomics-workflow.git

Path: docm/germline_workflow.cwl

Branch/Commit ID: e027d487e5cefba4f446f2036b933955608dbc31
workflow graph QIIME2 Step 2 (DADA2 option)

QIIME2 DADA2, feature summaries, phylogenetic diversity tree, taxonomic analysis and ancom

https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-dada2.cwl

Branch/Commit ID: 68c92437c854a200433ee684067f81f13de5d8eb

Packed ID: main