Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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exome alignment and germline variant detection, with optitype for HLA typing
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_exome_hla_typing.cwl Branch/Commit ID: 457e101e3fb87e7fd792357afce00ed8ccbfbcdb |
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Tumor-Only Detect Variants workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/tumor_only_detect_variants.cwl Branch/Commit ID: 449bc7e45bb02316d040f73838ef18359e770268 |
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exome alignment with qc
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/alignment_exome.cwl Branch/Commit ID: 00df82a529a58d362158110581e1daa28b4d7ecb |
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Build STAR indices
Workflow runs [STAR](https://github.com/alexdobin/STAR) v2.5.3a (03/17/2017) PMID: [23104886](https://www.ncbi.nlm.nih.gov/pubmed/23104886) to build indices for reference genome provided in a single FASTA file as fasta_file input and GTF annotation file from annotation_gtf_file input. Generated indices are saved in a folder with the name that corresponds to the input genome. |
https://github.com/datirium/workflows.git
Path: workflows/star-index.cwl Branch/Commit ID: 93b844a80f4008cc973ea9b5efedaff32a343895 |
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xenbase-sra-to-fastq-pe.cwl
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https://github.com/datirium/workflows.git
Path: workflows/xenbase-sra-to-fastq-pe.cwl Branch/Commit ID: 4b8bb1a1ec39056253ca8eee976078e51f4a954e |
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count-lines13-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines13-wf.cwl Branch/Commit ID: 2256a30d0c1365b30e0a7338fb883c74674fcd25 |
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scatter-valuefrom-wf3.cwl#main
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/scatter-valuefrom-wf3.cwl Branch/Commit ID: e62f99dd79d6cb9c157cceb458f74200da84f6e9 Packed ID: main |
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scatter-wf3.cwl#main
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/scatter-wf3.cwl Branch/Commit ID: 1f3ef888d9ef2306c828065c460c1800604f0de4 Packed ID: main |
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scatterfail.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/scatterfail.cwl Branch/Commit ID: f94719e862f86cc88600caf3628faba6c0d05042 |
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cond-wf-012.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/conditionals/cond-wf-012.cwl Branch/Commit ID: e62f99dd79d6cb9c157cceb458f74200da84f6e9 |
