Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Subworkflow to allow calling cnvkit with cram instead of bam files
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cram_to_cnvkit.cwl Branch/Commit ID: 8438316338e66823e1c9aca9f675b2bf33f2aa59 |
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downsample unaligned BAM and align
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/downsampled_alignment.cwl Branch/Commit ID: 3034168d652bfa930ba09af20e473a4564a8010d |
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align_merge_sas
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https://github.com/ncbi/pgap.git
Path: task_types/tt_align_merge_sas.cwl Branch/Commit ID: a79cec2331b3e17e382e8e5040405e8dd750c639 |
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Unaligned BAM to BQSR and VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl Branch/Commit ID: 97572e3a088d79f6a4166385f79e79ea77b11470 |
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kmer_seq_entry_extract_wnode
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https://github.com/ncbi-gpipe/pgap.git
Path: task_types/tt_kmer_seq_entry_extract_wnode.cwl Branch/Commit ID: b360e89d85d83ba3b863bf86074c0ec7e5c58f48 |
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cache_test_workflow.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/cache_test_workflow.cwl Branch/Commit ID: efd59864c24d97e6d0d1d273025d3ef9003fa44d |
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QIIME2 Step 3
QIIME2 Alpha/beta diversity analysis and Alpha rarefaction plotting |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step3-alpha-analysis.cwl Branch/Commit ID: ef08cb00bd55b4c712645d171dbc691e01ed6165 Packed ID: main |
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kmer_ref_compare_wnode
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https://github.com/ncbi-gpipe/pgap.git
Path: task_types/tt_kmer_ref_compare_wnode.cwl Branch/Commit ID: b360e89d85d83ba3b863bf86074c0ec7e5c58f48 |
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cache_test_workflow.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/cache_test_workflow.cwl Branch/Commit ID: eba80916b5cde8bdbd56c077c94240ddf796a27b |
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Unaligned to aligned BAM
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/align.cwl Branch/Commit ID: 97572e3a088d79f6a4166385f79e79ea77b11470 |
