Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	WGS QC workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_wgs.cwl Branch/Commit ID: 72e0bdc1ec449d86df4534132e9a30ad7e9b8afd
	Subworkflow that runs cnvkit in single sample mode and returns a vcf file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: 72e0bdc1ec449d86df4534132e9a30ad7e9b8afd
	etl_http.cwl	https://github.com/NCI-GDC/gdc-dnaseq-cwl.git Path: workflows/dnaseq/etl_http.cwl Branch/Commit ID: 98af742f0b342b731766bc975b95ee7cc1f90fd2
	merge and annotate svs with population allele freq	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/merge_svs.cwl Branch/Commit ID: 72e0bdc1ec449d86df4534132e9a30ad7e9b8afd
	hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather	https://github.com/ncbi/pgap.git Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl Branch/Commit ID: 7f857f7f2d7c080d27c775b67a6d6f7d94bce31f
	xenbase-sra-to-fastq-se.cwl	https://github.com/datirium/workflows.git Path: subworkflows/xenbase-sra-to-fastq-se.cwl Branch/Commit ID: 00ced0fc44ceeb3495e891232e1000235e56ee6b
	exome alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: e0b3c76e38630fb6234414b5adebfb6a4fb23117
	xenbase-fastq-bowtie-bigwig-se-pe.cwl	https://github.com/datirium/workflows.git Path: subworkflows/xenbase-fastq-bowtie-bigwig-se-pe.cwl Branch/Commit ID: 00ced0fc44ceeb3495e891232e1000235e56ee6b
	etl.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/fastq_readgroup_stats/etl.cwl Branch/Commit ID: 98af742f0b342b731766bc975b95ee7cc1f90fd2
	Detect DoCM variants	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/docm_germline.cwl Branch/Commit ID: f401b02285f30de1c12ac2859134099fe04be33f