Explore Workflows
View already parsed workflows here or click here to add your own
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trim-rnaseq-se.cwl
Runs RNA-Seq BioWardrobe basic analysis with single-end data file. |
https://github.com/Barski-lab/workflows.git
Path: workflows/trim-rnaseq-se.cwl Branch/Commit ID: 4723ce567089dc9ee51e067b813c5b527a3da16a |
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LBA_calibrator.cwl
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https://git.astron.nl/RD/LINC.git
Path: workflows/LBA_calibrator.cwl Branch/Commit ID: 731c1da202f50b9bc2b54362d2077966b1e878bb |
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conditional_step_no_inputs.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/conditional_step_no_inputs.cwl Branch/Commit ID: f6aeeae01ca1d821f2be1966f48f5257100f90e5 |
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grepsort workflow
a workflow that performs grep followed by sort |
https://github.com/ResearchObject/runcrate.git
Path: tests/data/grepsort-run-1/snapshot/grepsort.cwl Branch/Commit ID: a174b1ac80b93ec507e050615361aeb421f4d194 |
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scatter-wf1_v1_0.cwl
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https://github.com/common-workflow-language/cwl-utils.git
Path: testdata/scatter-wf1_v1_0.cwl Branch/Commit ID: fa7b09bd27a2c45236c94d916c3d26e90a5a7baf |
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revsort.cwl
Reverse the lines in a document, then sort those lines. |
https://github.com/ResearchObject/runcrate.git
Path: tests/data/revsort-run-1/snapshot/revsort.cwl Branch/Commit ID: a174b1ac80b93ec507e050615361aeb421f4d194 |
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workflow_input_sf_expr_array.cwl
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https://github.com/common-workflow-language/cwl-utils.git
Path: testdata/workflow_input_sf_expr_array.cwl Branch/Commit ID: fa7b09bd27a2c45236c94d916c3d26e90a5a7baf |
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bam-bedgraph-bigwig.cwl
Workflow converts input BAM file into bigWig and bedGraph files. Input BAM file should be sorted by coordinates (required by `bam_to_bedgraph` step). If `split` input is not provided use true by default. Default logic is implemented in `valueFrom` field of `split` input inside `bam_to_bedgraph` step to avoid possible bug in cwltool with setting default values for workflow inputs. `scale` has higher priority over the `mapped_reads_number`. The last one is used to calculate `-scale` parameter for `bedtools genomecov` (step `bam_to_bedgraph`) only in a case when input `scale` is not provided. All logic is implemented inside `bedtools-genomecov.cwl`. `bigwig_filename` defines the output name only for generated bigWig file. `bedgraph_filename` defines the output name for generated bedGraph file and can influence on generated bigWig filename in case when `bigwig_filename` is not provided. All workflow inputs and outputs don't have `format` field to avoid format incompatibility errors when workflow is used as subworkflow. |
https://github.com/Barski-lab/workflows.git
Path: tools/bam-bedgraph-bigwig.cwl Branch/Commit ID: 4723ce567089dc9ee51e067b813c5b527a3da16a |
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js-expr-req-wf.cwl#wf
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https://github.com/common-workflow-language/cwl-utils.git
Path: testdata/js-expr-req-wf.cwl Branch/Commit ID: fa7b09bd27a2c45236c94d916c3d26e90a5a7baf Packed ID: wf |
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step_valuefrom5_wf_with_id_v1_1.cwl
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https://github.com/common-workflow-language/cwl-utils.git
Path: testdata/step_valuefrom5_wf_with_id_v1_1.cwl Branch/Commit ID: fa7b09bd27a2c45236c94d916c3d26e90a5a7baf |
