Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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bacterial_kmer
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https://github.com/ncbi/pgap.git
Path: bacterial_kmer/wf_bacterial_kmer.cwl Branch/Commit ID: 54c5074587af001a44eccb4762a4cb25fa24cb3e |
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transform.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/transform.cwl Branch/Commit ID: 6b43e8b03256492f2b36ffcf548704daaafee6f6 |
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extract_readgroup_fastq_pe.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/extract_readgroup_fastq_pe.cwl Branch/Commit ID: 6b43e8b03256492f2b36ffcf548704daaafee6f6 |
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extract_capture_kit.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/extract_capture_kit.cwl Branch/Commit ID: 6b43e8b03256492f2b36ffcf548704daaafee6f6 |
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bacterial_kmer
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https://github.com/ncbi/pgap.git
Path: bacterial_kmer/wf_bacterial_kmer.cwl Branch/Commit ID: a33936cca222084cf68e00076255359688b6708a |
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Align reference proteins plane complete workflow, with miniprot
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_protein_alignment_miniprot.cwl Branch/Commit ID: 2afb5ebafd1353ba063cc74ee9a7eaf347afce5c |
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checkm
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https://github.com/ncbi/pgap.git
Path: checkm/wf_checkm.cwl Branch/Commit ID: 2afb5ebafd1353ba063cc74ee9a7eaf347afce5c |
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Non-Coding Bacterial Genes
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https://github.com/ncbi/pgap.git
Path: bacterial_noncoding/wf_bacterial_noncoding.cwl Branch/Commit ID: 2afb5ebafd1353ba063cc74ee9a7eaf347afce5c |
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Bacterial Annotation, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_2nd_pass.cwl Branch/Commit ID: 2afb5ebafd1353ba063cc74ee9a7eaf347afce5c |
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Bacterial Annotation, ab initio (first pass) searched against AntiFam
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_ab_initio_antifam.cwl Branch/Commit ID: 2afb5ebafd1353ba063cc74ee9a7eaf347afce5c |
