Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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WGS QC workflow mouse
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_wgs_mouse.cwl Branch/Commit ID: 258bd4353ad1ca7790b3ae626bf42ab8194e7561 |
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Running cellranger count and lineage inference
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/single_cell_rnaseq.cwl Branch/Commit ID: d3e4bf55753cd92f97537c7d701187ea92d1e5f0 |
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wgs alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_wgs.cwl Branch/Commit ID: bc3e2a0666812d541418a82d0dfc4f0bba595be3 |
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count-lines2-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/count-lines2-wf.cwl Branch/Commit ID: 86c46cb397de029e4c91f02cca40fa2b54d22f37 |
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Raw sequence data to BQSR
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_to_bqsr.cwl Branch/Commit ID: 258bd4353ad1ca7790b3ae626bf42ab8194e7561 |
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consensus_bed.cwl
Workflow to merge a large number of maf files into a single consensus bed file |
https://github.com/mskcc/pluto-cwl.git
Path: cwl/consensus_bed.cwl Branch/Commit ID: 7eb2b0a4d37018142233d770595ac2e00376dab4 |
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scatter2.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/scatter2.cwl Branch/Commit ID: eba80916b5cde8bdbd56c077c94240ddf796a27b |
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rnaseq-alignment-circRNA-multiple-samples
This workflow aligns multiple samples using STAR for paired-end samples to be used in circRNA pipeline |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/Alignments/star-alignment-circRNA-multiple-samples-default.cwl Branch/Commit ID: e1c19e64f6fc210f65472ee227786d33c9b4909a |
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workflow-blast-phobius.cwl
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https://github.com/ebi-wp/webservice-cwl.git
Path: workflows/workflow-blast-phobius.cwl Branch/Commit ID: 215ed5c67a58df03be61e976a93588075bd255a5 |
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revsort.cwl
Reverse the lines in a document, then sort those lines. |
https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/revsort.cwl Branch/Commit ID: 86c46cb397de029e4c91f02cca40fa2b54d22f37 |
