Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Apply filters to VCF file

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/filter_vcf.cwl

Branch/Commit ID: e59c77629936fad069007ba642cad49fef7ad29f
workflow graph step2: trimming fastq files (paired-end)

multiple fastq files trimming process using fastp version 0.23.4 and scatter feature requirement

 https://github.com/RyoNozu/CWL4IncorporateTSSintoGXF.git

Path: workflow/01_trimming_fastq_subworkflow_pe.cwl

Branch/Commit ID: 9728a86f7b73f7657a1f261e77a14ca59bdd561b
workflow graph sum-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/sum-wf.cwl

Branch/Commit ID: b82ce7ae901a54c7a062fd5eefd8d5ceb5a4d684
workflow graph scatter-wf1.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/scatter-wf1.cwl

Branch/Commit ID: 2256a30d0c1365b30e0a7338fb883c74674fcd25
workflow graph basename-fields-test.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/basename-fields-test.cwl

Branch/Commit ID: 8010fd2bf1e7090ba6df6ca8c84bbb96e2272d32
workflow graph Cell Ranger Aggregate (ATAC)

Cell Ranger Aggregate (ATAC) Combines outputs from multiple runs of “Cell Ranger Count (ATAC)” pipeline.

 https://github.com/datirium/workflows.git

Path: workflows/cellranger-atac-aggr.cwl

Branch/Commit ID: b4d578c2ba4713a5a22163d9f8c7105acda1f22e
workflow graph 1st-workflow.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/1st-workflow.cwl

Branch/Commit ID: 6300a49ec29be956ab451311fe9781522f461aee
workflow graph Single-Cell RNA-Seq Cluster Analysis

Single-Cell RNA-Seq Cluster Analysis Clusters cells by similarity of gene expression data from the outputs of the “Single-Cell RNA-Seq Dimensionality Reduction Analysis” pipeline. The results of this workflow are used in the “Single-Cell Manual Cell Type Assignment”, “Single-Cell RNA-Seq Differential Expression Analysis”, “Single-Cell RNA-Seq Trajectory Analysis”, and “Single-Cell Differential Abundance Analysis” pipelines.

 https://github.com/datirium/workflows.git

Path: workflows/sc-rna-cluster.cwl

Branch/Commit ID: 30031ca5e69cec603c4733681de54dc7bffa20a3
workflow graph workflow_same_level.cwl#main_pipeline

Simulation steps pipeline

 https://github.com/ILIAD-ocean-twin/application_package.git

Path: workflow_in_workflow/workflow_same_level.cwl

Branch/Commit ID: c7009260d3d659b77148dff5cd79b71d0e01ff41

Packed ID: main_pipeline
workflow graph pipeline_v2.cwl#openoil_pipeline

Animation of an oil spill with openoil

 https://github.com/ILIAD-ocean-twin/application_package.git

Path: openoil/pipeline_v2.cwl

Branch/Commit ID: c7009260d3d659b77148dff5cd79b71d0e01ff41

Packed ID: openoil_pipeline