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Showing results for "rnaseq" (Show all)
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rnaseq-alignment-quantification
This workflow retrieve SRA fastqc data and execute QC, alignment and quantification from TPMCalculator |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/RNA-Seq/rnaseq-quantification-qc.cwl Branch/Commit ID: b5a440939ac6022ee81aeeb0dd7daf3983228a61 |
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trim-rnaseq-pe-dutp.cwl
Runs RNA-Seq BioWardrobe basic analysis with strand specific pair-end data file. |
https://github.com/Barski-lab/workflows.git
Path: workflows/trim-rnaseq-pe-dutp.cwl Branch/Commit ID: 4723ce567089dc9ee51e067b813c5b527a3da16a |
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trim-rnaseq-pe.cwl
Runs RNA-Seq BioWardrobe basic analysis with pair-end data file. |
https://github.com/Barski-lab/workflows.git
Path: workflows/trim-rnaseq-pe.cwl Branch/Commit ID: 749460273e6c8d9e8b7d2395f0ac157701d3495e |
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rnaseq-pe-dutp.cwl
Runs RNA-Seq BioWardrobe basic analysis with strand specific pair-end data file. |
https://github.com/Barski-lab/workflows.git
Path: workflows/rnaseq-pe-dutp.cwl Branch/Commit ID: 5a92b026bd62fe1597de940088e8adeef6939d5a |
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allele-rnaseq-pe.cwl
Allele specific RNA-Seq paired-end workflow |
https://github.com/datirium/workflows.git
Path: workflows/allele-rnaseq-pe.cwl Branch/Commit ID: a9551ece898f619167db58e4b74a6cae2d7f7d13 |
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Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pvacseq.cwl Branch/Commit ID: d57c2af01a3cb6016e5a264f60641eafd2e5aa05 |
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trim-rnaseq-pe-dutp.cwl
Runs RNA-Seq BioWardrobe basic analysis with strand specific pair-end data file. |
https://github.com/Barski-lab/workflows.git
Path: workflows/trim-rnaseq-pe-dutp.cwl Branch/Commit ID: e706ffe742cfdf713c4315ab2fb56d07f7e688cb |
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allele-vcf-rnaseq-se.cwl
Allele specific RNA-Seq (using vcf) single-read workflow |
https://github.com/datirium/workflows.git
Path: workflows/allele-vcf-rnaseq-se.cwl Branch/Commit ID: cb5e5b8563be4977e9f2babc14fe084faa234847 |
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Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pvacseq.cwl Branch/Commit ID: 51724b44c96e5fd849ae55b752865b80bc47d66c |
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allele-vcf-rnaseq-pe.cwl
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https://github.com/Barski-lab/workflows.git
Path: workflows/allele-vcf-rnaseq-pe.cwl Branch/Commit ID: ca2dbb71d0537b1d93a8bd44719250cf8949b157 |
