Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph 04-quantification-se-stranded.cwl

RNA-seq 04 quantification

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/04-quantification-se-stranded.cwl

Branch/Commit ID: master
workflow graph CWL-RNAseq.cwl

https://github.com/junyussh/RunningWorkflows-on-the-GoogleCloud.git

Path: CWL-RNAseq/CWL-RNAseq.cwl

Branch/Commit ID: master
workflow graph BuildCembaReferences.cwl

https://github.com/common-workflow-lab/wdl-cwl-translator.git

Path: wdl2cwl/tests/cwl_files/BuildCembaReferences.cwl

Branch/Commit ID: main
workflow graph 5S-from-tablehits.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/5S-from-tablehits.cwl

Branch/Commit ID: c211071
workflow graph Hello World

Outputs a message using echo

 https://github.com/YangYang-Lcos/legacy.git

Path: workflows/hello/hello-param.cwl

Branch/Commit ID: master
workflow graph wf_trim_partial_and_map_se.cwl

This workflow takes in appropriate trimming params and demultiplexed reads, and performs the following steps in order: trimx1, trimx2, fastq-sort, filter repeat elements, fastq-sort, genomic mapping, sort alignment, index alignment, namesort, PCR dedup, sort alignment, index alignment

https://github.com/yeolab/eclip.git

Path: cwl/wf_trim_partial_and_map_se.cwl

Branch/Commit ID: master
workflow graph hi-c-processing-pairs.cwl

https://github.com/mr-c/4dn-dcic-pipelines-cwl.git

Path: cwl_awsem_v1/hi-c-processing-pairs.cwl

Branch/Commit ID: master
workflow graph Transcriptome assembly workflow (single-end version)

https://github.com/EBI-Metagenomics/workflow-is-cwl.git

Path: workflows/TranscriptomeAssembly-wf.single-end.cwl

Branch/Commit ID: assembly
workflow graph EMG assembly for paired end Illumina

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: workflows/emg-assembly.cwl

Branch/Commit ID: f993cad
workflow graph Produce a list of residue-mapped structural domain instances from CATH ids

Retrieve and process the PDB structures corresponding to the CATH superfamily ids resulting in a list of residue-mapped structural domain instances along with lost structural instances (requires Data/cath_domain_description_file.txt downloaded from CATH and uses SIFTS resource for PDB to UniProt residue Mapping)

https://github.com/HrishiDhondge/CroMaSt.git

Path: Tools/resmapping_cath_instances_subwf.cwl

Branch/Commit ID: main