Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
exome alignment with qc
|
https://github.com/litd/analysis-workflows.git
Path: definitions/pipelines/alignment_exome.cwl Branch/Commit ID: 336f7d1af649f42543baa6be2594cd872919b5b5 |
|
|
|
vecscreen.cwl
|
https://github.com/ncbi/pgap.git
Path: vecscreen/vecscreen.cwl Branch/Commit ID: 75ea689c0a8c9902b4598b453455857cb08e885a |
|
|
|
Tumor-Only Detect Variants workflow
|
https://github.com/litd/analysis-workflows.git
Path: definitions/pipelines/tumor_only_detect_variants.cwl Branch/Commit ID: 336f7d1af649f42543baa6be2594cd872919b5b5 |
|
|
|
strelka workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/strelka_and_post_processing.cwl Branch/Commit ID: 43c790e2ee6a0f3f42e40fb4d9a9005eb8de747a |
|
|
|
Apply filters to VCF file
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/filter_vcf.cwl Branch/Commit ID: 43c790e2ee6a0f3f42e40fb4d9a9005eb8de747a |
|
|
|
extract_gencoll_ids
|
https://github.com/ncbi-gpipe/pgap.git
Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: 70e530b65b33301032b7510095d89e497bf5e34e |
|
|
|
Run pindel on provided region
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: 43c790e2ee6a0f3f42e40fb4d9a9005eb8de747a |
|
|
|
genomics-workspace-transcript.cwl
|
https://github.com/nal-i5k/organism_onboarding.git
Path: flow_genomicsWorkspace/genomics-workspace-transcript.cwl Branch/Commit ID: 0b58c250e8ab7c5efae29443f08ea74316127041 |
|
|
|
genomics-workspace-genome.cwl
|
https://github.com/nal-i5k/organism_onboarding.git
Path: flow_genomicsWorkspace/genomics-workspace-genome.cwl Branch/Commit ID: 0b58c250e8ab7c5efae29443f08ea74316127041 |
|
|
|
kmer_build_tree
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: 75ea689c0a8c9902b4598b453455857cb08e885a |
