Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	bwa_mem	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/cwl/subworkflows/bwa_mem.cwl Branch/Commit ID: 9ac2d150a57d1996210ed6a44dd0c0404dab383c
	cnv_codex CNV CODEX calling	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/cwl/subworkflows/cnv_codex.cwl Branch/Commit ID: 9ac2d150a57d1996210ed6a44dd0c0404dab383c
	cnv_gridss CNV GRIDSS calling	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/cwl/subworkflows/cnv_gridss.cwl Branch/Commit ID: 9ac2d150a57d1996210ed6a44dd0c0404dab383c
	bwa_index	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/cwl/subworkflows/bwa_index.cwl Branch/Commit ID: 9ac2d150a57d1996210ed6a44dd0c0404dab383c
	GATK4_SomaticVariantCaller_4_1_3_0.cwl	https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git Path: janis_pipelines/wgs_somatic/cwl/tools/GATK4_SomaticVariantCaller_4_1_3_0.cwl Branch/Commit ID: d3ae7483f860339a12c5f404de9db0f026571f77
	tt_hmmsearch_wnode.cwl	https://github.com/ncbi/pgap.git Path: task_types/tt_hmmsearch_wnode.cwl Branch/Commit ID: 505b91e41741ccbcd5ebd2b6a09a3be604f9ece3
	final_filtering Final filtering	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/cwl/subworkflows/final_filtering.cwl Branch/Commit ID: 9ac2d150a57d1996210ed6a44dd0c0404dab383c
	cram_to_bam workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cram_to_bam_and_index.cwl Branch/Commit ID: ddd748516b25256a461ea9277303406fa2759b00
	ani_top_n	https://github.com/ncbi/pgap.git Path: task_types/tt_ani_top_n.cwl Branch/Commit ID: add6b7724698694e0e72d972e2e85e1ae4e67902
	kmer_top_n_extract	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_top_n_extract.cwl Branch/Commit ID: dc6014dc7c1f160ec4ae3d5a57388a6dceaacbc5