Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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ani_top_n
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https://github.com/ncbi/pgap.git
Path: task_types/tt_ani_top_n.cwl Branch/Commit ID: f5c11df465aaadf712c38ba4933679fe1cbe03ca |
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umi molecular alignment fastq workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/umi_molecular_alignment.cwl Branch/Commit ID: f21b6c6f70f01d0fe08193684060161107f0bf59 |
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wgs alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_wgs.cwl Branch/Commit ID: f615832615c3b41728df8e47b72ef11e37e6a9e5 |
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alignment_bwa_mem_no_trim.cwl
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https://github.com/uc-cdis/genomel_pipelines.git
Path: genomel/cwl/workflows/harmonization/alignment_bwa_mem_no_trim.cwl Branch/Commit ID: 91e222adeeee0bd567a5bf2385400610fad0d3a9 |
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Cell Ranger Count (ATAC)
Cell Ranger Count (ATAC) Quantifies single-cell chromatin accessibility of the sequencing data from a single 10x Genomics library. The results of this workflow are used in either the “Single-Cell ATAC-Seq Filtering Analysis” or “Cell Ranger Aggregate (ATAC)” pipeline. |
https://github.com/datirium/workflows.git
Path: workflows/cellranger-atac-count.cwl Branch/Commit ID: b4d578c2ba4713a5a22163d9f8c7105acda1f22e |
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wgs alignment with qc
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/wgs_alignment.cwl Branch/Commit ID: 86fbeb95ef85111f3b4c6bc2bba8f06cef64e157 |
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conflict.cwl#main
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/conflict.cwl Branch/Commit ID: 6d8c2a41e2c524e8d746020cc91711ecc3418a23 Packed ID: main |
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tt_blastn_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_blastn_wnode.cwl Branch/Commit ID: a3affd1b9e3e16f0644a25fee1a7b87b99df57b0 |
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record-output-wf_v1_1.cwl
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https://github.com/common-workflow-language/cwl-utils.git
Path: testdata/record-output-wf_v1_1.cwl Branch/Commit ID: 0ad6983898f0d9001fe0f416f97c4d8b940e384a |
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exome alignment with qc, no bqsr, no verify_bam_id
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/alignment_exome_nonhuman.cwl Branch/Commit ID: 00df82a529a58d362158110581e1daa28b4d7ecb |
