Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	exome alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/germline_exome.cwl Branch/Commit ID: 2e298960837739717ec2928a99c5d811183012e6
	Unaligned BAM to BQSR	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: c625e05eefb1754353c1bdfa46c01dc61e6233dd
	varscan somatic workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: 0b6e8fd8ead7644cf5398395b76af5cf4011686f
	foreign_screening.cwl	https://github.com/ncbi/pgap.git Path: vecscreen/foreign_screening.cwl Branch/Commit ID: 4533a5e930305c674057bc4cf5dda4f39d39b5df
	scRNA-seq pipeline using Salmon and Alevin	https://github.com/hubmapconsortium/salmon-rnaseq.git Path: pipeline.cwl Branch/Commit ID: 2331bffee5dcedf692ee5a2c0fa9df670d8d7834
	umi molecular alignment fastq workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/alignment_umi_molecular.cwl Branch/Commit ID: 2ae0a374fab650757cdae4391c8cbd32f02edf97
	revsort.cwl Reverse the lines in a document, then sort those lines.	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/revsort.cwl Branch/Commit ID: 819c81af5449ec912bbbbead042ad66b8d3fd8d4
	atac_encode_sample.cwl	https://github.com/ngs-mstb/micgent.git Path: python/lib/MICGENT/data/cwl/atac_encode_sample.cwl Branch/Commit ID: 0be1abb140bfad17f8a166d0c804fb1e9ad64537
	harmonization_bwa_mem.cwl	https://github.com/uc-cdis/genomel_pipelines.git Path: genomel/cwl/workflows/harmonization/harmonization_bwa_mem.cwl Branch/Commit ID: 28bb82ba031041321ff9caa5c299ec1bb15d7471
	Running cellranger count and lineage inference	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_cell_rnaseq.cwl Branch/Commit ID: 038cb3617a1966a1057386adcde97ce55d9e1139