Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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bam to trimmed fastqs and biscuit alignments
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl Branch/Commit ID: 6bfb64375e7ebb6eb40f463ede86d8deccdb9eff |
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tindaisy-postmerge.cwl
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https://github.com/ding-lab/TinDaisy.git
Path: cwl/workflows/tindaisy-postmerge.cwl Branch/Commit ID: 43330deda32a6ad9e4f8a8cc51a2cf1ba380fff6 |
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idr-no-pooled.cwl
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https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/ChIP-Seq/idr-no-pooled.cwl Branch/Commit ID: b5a440939ac6022ee81aeeb0dd7daf3983228a61 |
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Pipeline for evaluating differential expression of genes across datasets
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https://github.com/hubmapconsortium/rna-data-products.git
Path: pipeline.cwl Branch/Commit ID: 8b08a2a2a0a9621254f89cca2f8d7896713f79e5 |
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igv-report_maf_workflow.cwl
Workflow to run GetBaseCountsMultiSample fillout on a number of samples, each with their own bam and maf files |
https://github.com/mskcc/pluto-cwl.git
Path: cwl/igv-report_maf_workflow.cwl Branch/Commit ID: dbff0c5ae06a8b21ec70bc8279f32bce151cbfc2 |
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wgs alignment and tumor-only variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/wgs.cwl Branch/Commit ID: 5f120e5bc3c0f75bfbc636ea2c6f4393f5d45ca1 |
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kmer_build_tree
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: a1f39f21670be28427ceb91ceaeb9339545c18fc |
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gatk4.2.4.1_mutect2_workflow.cwl
GATK4.2.4.1 Mutect2 workflow |
https://github.com/NCI-GDC/gatk4_mutect2_cwl.git
Path: subworkflows/gatk4.2.4.1_mutect2_workflow.cwl Branch/Commit ID: 02129060b3a92f90daf1328f21b9db49da7a5aca |
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mutect parallel workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/mutect.cwl Branch/Commit ID: 9ad798f18104eb4a9c6c118f42691b9f5d9efd19 |
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scRNA-seq pipeline using Salmon and Alevin
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https://github.com/hubmapconsortium/visium-pipeline.git
Path: pipeline.cwl Branch/Commit ID: 2a7c4878c6207722d28a7794a1e52884bbe837ac |
