Explore Workflows
View already parsed workflows here or click here to add your own
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mpi_simple_wf.cwl
Simple 2 step workflow to check that workflow steps are independently picking up on the number of processes. First run the parallel get PIDs step (on the input num procs) then run (on a single proc) the line count. This should equal the input. |
https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/mpi_simple_wf.cwl Branch/Commit ID: 22bc7d80dd524767b7d7d115747556ac62c27e9f |
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step-valuefrom2-wf_v1_0.cwl
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https://github.com/common-workflow-language/cwl-utils.git
Path: testdata/step-valuefrom2-wf_v1_0.cwl Branch/Commit ID: 88ad2a6ad70d7124b094e0cb3e5f72b78078c7e2 |
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super-enhancer.cwl
Both `islands_file` and `islands_control_file` should be produced by the same cwl tool (iaintersect.cwl or macs2-callpeak-biowardrobe-only.cwl) |
https://github.com/Barski-lab/workflows.git
Path: workflows/super-enhancer.cwl Branch/Commit ID: 4723ce567089dc9ee51e067b813c5b527a3da16a |
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Filter Protein Alignments I
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https://github.com/ncbi-gpipe/pgap.git
Path: protein_alignment/wf_align_filter.cwl Branch/Commit ID: e77d435a1e569d5bbcb20c046632ccf93be004a7 |
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default-dir5.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/default-dir5.cwl Branch/Commit ID: 22bc7d80dd524767b7d7d115747556ac62c27e9f |
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tt_fscr_calls_pass1
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https://github.com/ncbi/pgap.git
Path: task_types/tt_fscr_calls_pass1.cwl Branch/Commit ID: 4e7b8f243f5356653edd286eab24f419f39da189 |
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Run genomic CMsearch
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https://github.com/ncbi/pgap.git
Path: bacterial_noncoding/wf_gcmsearch.cwl Branch/Commit ID: 4e7b8f243f5356653edd286eab24f419f39da189 |
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wgs alignment and tumor-only variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/wgs.cwl Branch/Commit ID: 37a3622d1d03812e4f868b5024c52607696bfb75 |
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scatter-valuefrom-wf5.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/scatter-valuefrom-wf5.cwl Branch/Commit ID: 4fa45edd0c445c1cff7dee986d69a31cdd5e5dff |
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workflow_input_format_expr_v1_2.cwl
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https://github.com/common-workflow-language/cwl-utils.git
Path: testdata/workflow_input_format_expr_v1_2.cwl Branch/Commit ID: 88ad2a6ad70d7124b094e0cb3e5f72b78078c7e2 |
