Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Trim and reformat reads (single and paired end version)
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: workflows/trim_and_reformat_reads.cwl Branch/Commit ID: 886df9de6713e06228d2560c40f451155a196383 |
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rRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/rRNA_selection.cwl Branch/Commit ID: 886df9de6713e06228d2560c40f451155a196383 |
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transform.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/dnaseq/transform.cwl Branch/Commit ID: cf2e9d7c3cc87ce97a1fbf73fad574b170fedcfb |
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Run genomic CMsearch (5S rRNA)
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https://github.com/ncbi-gpipe/pgap.git
Path: bacterial_noncoding/wf_gcmsearch.cwl Branch/Commit ID: c08fd46e8f715b9b5aa487466705863e4b1829df |
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protein_extract
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https://github.com/ncbi-gpipe/pgap.git
Path: progs/protein_extract.cwl Branch/Commit ID: c08fd46e8f715b9b5aa487466705863e4b1829df |
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tt_hmmsearch_wnode.cwl
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https://github.com/ncbi-gpipe/pgap.git
Path: task_types/tt_hmmsearch_wnode.cwl Branch/Commit ID: c08fd46e8f715b9b5aa487466705863e4b1829df |
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Filter Protein Alignments I
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https://github.com/ncbi-gpipe/pgap.git
Path: protein_alignment/wf_align_filter.cwl Branch/Commit ID: c08fd46e8f715b9b5aa487466705863e4b1829df |
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Seed Search Compartments
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https://github.com/ncbi-gpipe/pgap.git
Path: protein_alignment/wf_seed.cwl Branch/Commit ID: c08fd46e8f715b9b5aa487466705863e4b1829df |
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Filter Protein Seeds I; Find ProSplign Alignments I
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https://github.com/ncbi-gpipe/pgap.git
Path: protein_alignment/wf_compart_filter_prosplign.cwl Branch/Commit ID: c08fd46e8f715b9b5aa487466705863e4b1829df |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: 886df9de6713e06228d2560c40f451155a196383 |
