Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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align_merge_sas
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https://github.com/ncbi/pgap.git
Path: task_types/tt_align_merge_sas.cwl Branch/Commit ID: 609aead9804a8f31fa9b3dbc7e52105aec487f31 |
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Run genomic CMsearch
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https://github.com/ncbi/pgap.git
Path: bacterial_noncoding/wf_gcmsearch.cwl Branch/Commit ID: 9362082213e20315f76f6f5c235cac3aae565747 |
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picard_markduplicates
Mark duplicates |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/picard_markduplicates.cwl Branch/Commit ID: d07f44fc5c253dc4044d86ea79ac6f9e03c01bfa |
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cnv_manta
CNV Manta calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/cnv_manta.cwl Branch/Commit ID: 8ca112300d819e3a24a78483685adc42d6199e46 |
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cnv_exomedepth
CNV ExomeDepth calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/cnv_exome_depth.cwl Branch/Commit ID: 8ca112300d819e3a24a78483685adc42d6199e46 |
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bact_get_kmer_reference
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https://github.com/ncbi/pgap.git
Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: 4e2a295bb6c8b4982402ee80538a0cdb8ee6b6dd |
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wf_get_peaks_chimeric_se.cwl
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https://github.com/YeoLab/eclip.git
Path: cwl/wf_get_peaks_chimeric_se.cwl Branch/Commit ID: 49a9bcda10de8f55fab2481f424eb9cdf2e5b256 |
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bacterial_screening.cwl
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https://github.com/ncbi/pgap.git
Path: vecscreen/bacterial_screening.cwl Branch/Commit ID: 9362082213e20315f76f6f5c235cac3aae565747 |
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CODEX analysis pipeline using Cytokit
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https://github.com/hubmapconsortium/codex-pipeline.git
Path: steps/ometiff_second_stitching.cwl Branch/Commit ID: d8efe116c9fd79d21646ec215799b52b95dfd709 |
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tt_fscr_calls_pass1
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https://github.com/ncbi/pgap.git
Path: task_types/tt_fscr_calls_pass1.cwl Branch/Commit ID: 9362082213e20315f76f6f5c235cac3aae565747 |
