Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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trimmed_fastq
Quality Control and Raw Data trimming |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/trimmed_fastq.cwl Branch/Commit ID: 7fe278136146cbe6567816f1819f0725afeba021 |
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samtools_sort
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/samtools_sort.cwl Branch/Commit ID: 0864e19de6a1732a1376c6a64a93794d2fc45d23 |
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picard_markduplicates
Mark duplicates |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/picard_markduplicates.cwl Branch/Commit ID: 7fe278136146cbe6567816f1819f0725afeba021 |
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gcaccess_from_list
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https://github.com/ncbi/pgap.git
Path: task_types/tt_gcaccess_from_list.cwl Branch/Commit ID: d39017c63dd8e088f1ad3809d709529df602e05f |
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wf_trim_and_map_se.cwl
This workflow takes in appropriate trimming params and demultiplexed reads, and performs the following steps in order: trimx1, trimx2, fastq-sort, filter repeat elements, fastq-sort, genomic mapping, sort alignment, index alignment, namesort, PCR dedup, sort alignment, index alignment |
https://github.com/YeoLab/eclip.git
Path: cwl/wf_trim_and_map_se.cwl Branch/Commit ID: 49a9bcda10de8f55fab2481f424eb9cdf2e5b256 |
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gcaccess_from_list
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https://github.com/ncbi/pgap.git
Path: task_types/tt_gcaccess_from_list.cwl Branch/Commit ID: 609aead9804a8f31fa9b3dbc7e52105aec487f31 |
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tmb.cwl
Workflow for calculating TMB tumor mutational burden on a single sample |
https://github.com/mskcc/pluto-cwl.git
Path: cwl/tmb.cwl Branch/Commit ID: d8a8af9fdb69c0a4003680c1d3b96f35d5e48f0e |
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genomics-workspace-genome.cwl
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https://github.com/NAL-i5K/Organism_Onboarding.git
Path: flow_genomicsWorkspace/genomics-workspace-genome.cwl Branch/Commit ID: 89cff9f0d36a23bf57b3f4bdbd3ed57e3347c945 |
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workflow.cwl
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https://github.com/NAL-i5K/Organism_Onboarding.git
Path: flow_md5checksums/workflow.cwl Branch/Commit ID: c6077d2756e628f469b446e1584ac8a86582d729 |
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WGS QC workflow nonhuman
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_wgs_nonhuman.cwl Branch/Commit ID: a08de598edc04f340fdbff76c9a92336a7702022 |
