Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	exome alignment with qc, no bqsr, no verify_bam_id	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/alignment_exome_nonhuman.cwl Branch/Commit ID: 7638b3075863ae8172f4adaec82fb2eb8e80d3d5
	tt_kmer_compare_wnode Pairwise comparison	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_compare_wnode.cwl Branch/Commit ID: d39017c63dd8e088f1ad3809d709529df602e05f
	samples_fillout_workflow.cwl Workflow to run GetBaseCountsMultiSample fillout on a number of samples, each with their own bam and maf files	https://github.com/mskcc/pluto-cwl.git Path: cwl/samples_fillout_workflow.cwl Branch/Commit ID: 342e6f1f4f7a3839e579fbe96ccc8d6f7a61ac77
	align_sort_sa	https://github.com/ncbi/pgap.git Path: task_types/tt_align_sort_sa.cwl Branch/Commit ID: 369afa7090a7480e6a0b144eff967a4a52b6fde2
	gathered exome alignment and somatic variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome_gathered.cwl Branch/Commit ID: 9cbf2a483e1b9e4cdb8e2564be27a9e64fc1169e
	analysis-workflow.cwl	https://github.com/mskcc/pluto-cwl.git Path: cwl/analysis-workflow.cwl Branch/Commit ID: 7eb2b0a4d37018142233d770595ac2e00376dab4
	portal-workflow.cwl	https://github.com/mskcc/pluto-cwl.git Path: cwl/portal-workflow.cwl Branch/Commit ID: 7eb2b0a4d37018142233d770595ac2e00376dab4
	kmer_build_tree	https://github.com/ncbi-gpipe/pgap.git Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: 97330968839983824a11ac32dff981d8ecb00955
	vecscreen.cwl	https://github.com/ncbi/pgap.git Path: vecscreen/vecscreen.cwl Branch/Commit ID: b38b0070edf910984f29a4a495b5dfa525b8b305
	msi_workflow.cwl Workflow to run the MSI analysis on a batch of samples and merge the results back into a single data clinical file	https://github.com/mskcc/pluto-cwl.git Path: cwl/msi_workflow.cwl Branch/Commit ID: 7eb2b0a4d37018142233d770595ac2e00376dab4