Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph snaptools_create_snap_file.cwl

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: steps/snaptools_create_snap_file.cwl

Branch/Commit ID: e1af1eb62aa9f757bded9b995411d25e098b3572
workflow graph Filter single sample sv vcf from paired read callers(Manta/Smoove)

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/sv_paired_read_caller_filter.cwl

Branch/Commit ID: 43c790e2ee6a0f3f42e40fb4d9a9005eb8de747a
workflow graph workflow-fetch-phobius.cwl

https://github.com/ebi-wp/webservice-cwl.git

Path: workflows/workflow-fetch-phobius.cwl

Branch/Commit ID: f867131c9646cde56828c4d8999114f5ca958be9
workflow graph fp_filter workflow

https://github.com/litd/analysis-workflows.git

Path: definitions/subworkflows/fp_filter.cwl

Branch/Commit ID: 336f7d1af649f42543baa6be2594cd872919b5b5
workflow graph wf_fastqc.cwl

This workflow takes in single-end reads, and performs the following steps in order: demux_se.cwl (does not actually demux for single end, but mirrors the paired-end processing protocol)

https://github.com/YeoLab/eclip.git

Path: cwl/wf_fastqc.cwl

Branch/Commit ID: b389f7fe3e76cb6e3f31c3a8e2e3b59bb400e74c
workflow graph 04-quantification-pe-stranded.cwl

RNA-seq 04 quantification

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/04-quantification-pe-stranded.cwl

Branch/Commit ID: 487af88ef0b971f76ecd1a215639bb47e3ee94e1
workflow graph Raw sequence data to BQSR

https://github.com/litd/analysis-workflows.git

Path: definitions/subworkflows/sequence_to_bqsr.cwl

Branch/Commit ID: 336f7d1af649f42543baa6be2594cd872919b5b5
workflow graph Varscan Workflow

https://github.com/litd/analysis-workflows.git

Path: definitions/subworkflows/varscan_germline.cwl

Branch/Commit ID: 336f7d1af649f42543baa6be2594cd872919b5b5
workflow graph kmer_cache_store

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_cache_store.cwl

Branch/Commit ID: 0514ffe248dd11068a3f2268bc67b6ce5ab051d2
workflow graph scatterfail.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/scatterfail.cwl

Branch/Commit ID: 78fe9d41ee5a44f8725dfbd7028e4a5ee42949cf