Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	umi per-lane alignment subworkflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/umi_alignment.cwl Branch/Commit ID: 7638b3075863ae8172f4adaec82fb2eb8e80d3d5
	Nested workflow example	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/nested.cwl Branch/Commit ID: 2710cfe731374cf7244116dd7186fc2b6e4af344
	exome alignment with qc	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/alignment_exome.cwl Branch/Commit ID: 2e0562a5c3cd7aac24af4c622a5ae68a7fb23a71
	kmer_top_n	https://github.com/ncbi-gpipe/pgap.git Path: task_types/tt_kmer_top_n.cwl Branch/Commit ID: 70e530b65b33301032b7510095d89e497bf5e34e
	HS Metrics workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/hs_metrics.cwl Branch/Commit ID: 39ac49f5d080bbb6bfa97246f46a5b621254f622
	adapter for sequence_align_and_tag Some workflow engines won't stage files in our nested structure, so parse it out here	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: 39ac49f5d080bbb6bfa97246f46a5b621254f622
	wf_clipseqcore_pe_1barcode.cwl Workflow for handling reads containing one barcode. Returns the bam file containing read2 only. Notes: runs the following steps: - demultiplex - trimfirst_file2string - trimagain_file2string - b1_trim_and_map - view_r2 - index_r2_bam - make_bigwigs	https://github.com/YeoLab/eclip.git Path: cwl/wf_clipseqcore_pe_1barcode.cwl Branch/Commit ID: b389f7fe3e76cb6e3f31c3a8e2e3b59bb400e74c
	taxonomy_check_16S	https://github.com/ncbi/pgap.git Path: task_types/tt_taxonomy_check_16S.cwl Branch/Commit ID: 001e133e0eedaf0dd8447e3f8b3cc898ec6e3e1d
	Filter single sample sv vcf from depth callers(cnvkit/cnvnator)	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sv_depth_caller_filter.cwl Branch/Commit ID: 43c790e2ee6a0f3f42e40fb4d9a9005eb8de747a
	final-workflow.cwl	https://github.com/nal-i5k/organism_onboarding.git Path: final-workflow.cwl Branch/Commit ID: 7198756b4b1519d102178042924671bd677e9b17