Explore Workflows
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Graph | Name | Retrieved From | View |
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01-qc-pe.cwl
RNA-seq 01 QC - reads: PE |
![]() Path: v1.0/RNA-seq_pipeline/01-qc-pe.cwl Branch/Commit ID: 6e68bda2cb45e8dc8e4d067c4220d65acfa53065 |
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rRNA_selection.cwl
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![]() Path: tools/rRNA_selection.cwl Branch/Commit ID: bcfe5f9affd23d52467f69b4b21d1098f0ca95d7 |
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biowardrobe_chipseq_se.cwl
Current workflow is used to run CHIP-Seq basic analysis with single-end input FASTQ file. In outputs it returns coordinate sorted BAM file alongside with index BAI file, quality statistics of the input FASTQ file, reads coverage in a form of BigWig file, peaks calling data in a form of narrowPeak or broadPeak files. |
![]() Path: biowardrobe_chipseq_se.cwl Branch/Commit ID: 77330fac31568e2c3e080ea771df813c039aefe6 |
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main-SGDP-recall.cwl
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![]() Path: SGDP-recall-CGC/SGDP-recall-cgc/main-SGDP-recall.cwl Branch/Commit ID: c4592973b1580e3ff44cb697f64b12345b91e6f5 |
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scatter-valuefrom-wf6.cwl
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![]() Path: v1.0/v1.0/scatter-valuefrom-wf6.cwl Branch/Commit ID: e0cc5bd1c2fc4625f2cb5a819d3c1939aa8460db |
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Seed Search Compartments
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![]() Path: protein_alignment/wf_seed.cwl Branch/Commit ID: 33414c888997d558bdcb558ca33c3a728a3e6143 |
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Filter Protein Seeds I; Find ProSplign Alignments I
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![]() Path: protein_alignment/wf_compart_filter_prosplign.cwl Branch/Commit ID: 33414c888997d558bdcb558ca33c3a728a3e6143 |
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etl.cwl
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![]() Path: workflows/fastq_readgroup_stats/etl.cwl Branch/Commit ID: 3cd06184444bb85e9773a3e7dc548c6dd3bdaccb |
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Trim and reformat reads (single and paired end version)
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![]() Path: workflows/trim_and_reformat_reads.cwl Branch/Commit ID: bcfe5f9affd23d52467f69b4b21d1098f0ca95d7 |
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Filter Protein Alignments I
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![]() Path: protein_alignment/wf_align_filter.cwl Branch/Commit ID: b51e37098871db9fbb7ee0cc642df98ddbb9092b |