Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph workflow_docker.cwl

[![Docker Repository on Quay](https://quay.io/repository/ratschlab/workflow-experiment/status \"Docker Repository on Quay\")](https://quay.io/repository/ratschlab/workflow-experiment) Very simple and very artifical workflow to experiment with containers and cwl.

https://github.com/ratschlab/tools-cwl-workflow-experiments.git

Path: cwl/workflow_docker.cwl

Branch/Commit ID: dafd2d4f966cb2fb2d9df050432a88f01e962202
workflow graph Functional analyis of sequences that match the 16S SSU

https://github.com/farahzkhan/ebi-metagenomics-cwl.git

Path: workflows/16S_taxonomic_analysis.cwl

Branch/Commit ID: bcfe5f9affd23d52467f69b4b21d1098f0ca95d7
workflow graph emblem_textures.cwl

https://gitlab.com/unduthegun/stellaris-emblem-lab.git

Path: textures/emblem_textures.cwl

Branch/Commit ID: 3a842d7ae8c964c9e972b412c80d779dbcee618a
workflow graph pcawg_annotate_wf.cwl

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation.git

Path: pcawg_annotate_wf.cwl

Branch/Commit ID: 00e98923d9ce49790080f88ae46f3d73a19eb65b
workflow graph checker-workflow-wrapping-tool.cwl

This demonstrates how to wrap a \"real\" tool with a checker workflow that runs both the tool and a tool that performs verification of results

https://github.com/dockstore-testing/md5sum-checker.git

Path: checker-workflow-wrapping-tool.cwl

Branch/Commit ID: 2e258215bff1d292b69243ac8761fe6830ea887a
workflow graph word-mapping-dir.cwl#main

https://github.com/KBNLresearch/ochre.git

Path: ochre/cwl/word-mapping-dir.cwl

Branch/Commit ID: bfd504ae910fbf7a3492f53430a1c9f3c3c97470

Packed ID: main
workflow graph tRNA_selection.cwl

https://github.com/FarahZKhan/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: bcfe5f9affd23d52467f69b4b21d1098f0ca95d7
workflow graph zip_and_index_vcf.cwl

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: 00e98923d9ce49790080f88ae46f3d73a19eb65b
workflow graph tRNA_selection.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: 3b602cb35bf68b9a3b2e16fe9ac4c3e2a9d8fdae
workflow graph cmsearch-multimodel.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/cmsearch-multimodel.cwl

Branch/Commit ID: 1b0851e6456ccb1fca237a805ff85c53bc9d58c9