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Showing results for "rnaseq" (Show all)

Graph Name Retrieved From View
workflow graph star2pass.rnaseq_harmonization.cwl

https://github.com/NCI-GDC/gdc-rnaseq-cwl.git

Path: rnaseq-star-align/star2pass.rnaseq_harmonization.cwl

Branch/Commit ID: 88fb720c62a3c2b00ca475d412fba088c4a08f92
workflow graph Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/pvacseq.cwl

Branch/Commit ID: ddd748516b25256a461ea9277303406fa2759b00
workflow graph rnaseq-alignment-circRNA-multiple-samples

This workflow aligns multiple samples using STAR for paired-end samples to be used in circRNA pipeline

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Alignments/star-alignment-circRNA-multiple-samples.cwl

Branch/Commit ID: 1b1cb5bbbe53a2dd5d7de7cdbff19c1bdbe23a49
workflow graph samtoolsW.cwl

Author: AMBARISH KUMAR er.ambarish@gmail.com; ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using VARSCAN. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence.

https://github.com/ambarishK/bio-cwl-tools.git

Path: samtoolsW.cwl

Branch/Commit ID: fcab170f3e8a4bc70601650401cce2a9df42f484
workflow graph trim-rnaseq-pe-dutp.cwl

Runs RNA-Seq BioWardrobe basic analysis with strand specific pair-end data file.

https://github.com/Barski-lab/workflows.git

Path: workflows/trim-rnaseq-pe-dutp.cwl

Branch/Commit ID: 80d64741638b14de5cf58236b6d6d99713c62086
workflow graph main-rnaseq.cwl

https://github.com/bcbio/test_bcbio_cwl.git

Path: rnaseq/rnaseq-workflow/main-rnaseq.cwl

Branch/Commit ID: e06975a7fc878fc0e381a1eae8fe6208d8cfe9bb
workflow graph rnaseq-header.cwl

https://github.com/datirium/workflows.git

Path: metadata/rnaseq-header.cwl

Branch/Commit ID: 29bf638904709cfbf10908adcd51ba4886ace94a
workflow graph Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/pvacseq.cwl

Branch/Commit ID: 22fce2dbdada0c4135b6f0677f78535cf980cb07
workflow graph rnaseq-header.cwl

https://github.com/datirium/workflows.git

Path: metadata/rnaseq-header.cwl

Branch/Commit ID: b957a4f681bf0ca8ebba4e0d0ec3936bf79620c5
workflow graph trim-rnaseq-pe.cwl

Runs RNA-Seq BioWardrobe basic analysis with pair-end data file.

https://github.com/Barski-lab/workflows.git

Path: workflows/trim-rnaseq-pe.cwl

Branch/Commit ID: cf84038de256c7ca98657ad81734d1aca1dad8c1