Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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EMG assembly for paired end Illumina
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-assembly.cwl Branch/Commit ID: 5e82174 |
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01-qc-se.cwl
RNA-seq 01 QC - reads: SE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/RNA-seq_pipeline/01-qc-se.cwl Branch/Commit ID: master |
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gathered exome alignment and somatic variant detection
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/somatic_exome_gathered.cwl Branch/Commit ID: downsample_and_recall |
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ug-distr.cwl
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https://github.com/sentieon/sentieon-cwl.git
Path: stage/ug-distr.cwl Branch/Commit ID: master |
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exomeseq.cwl#exomeseq-00-prepare-reference-data.cwl
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https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/exomeseq.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: exomeseq-00-prepare-reference-data.cwl |
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create_snap_and_analyze.cwl
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https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: create_snap_and_analyze.cwl Branch/Commit ID: bb023f9 |
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SV Pipeline
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https://github.com/ChrisMaherLab/PACT.git
Path: pipelines/sv_pipeline.cwl Branch/Commit ID: master |
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Quality assessment, amplicon classification and functional prediction
Workflow for quality assessment of paired reads and classification using NGTax 2.0 and functional annotation using picrust2. In addition files are exported to their respective subfolders for easier data management in a later stage. Steps: - FastQC (read quality control) - NGTax 2.0 - Picrust 2 - Export module for ngtax |
https://git.wur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_ngtax_picrust2.cwl Branch/Commit ID: master |
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test-data2.cwl
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https://github.com/kyusque/abmp_log_dump2pieda.git
Path: test-data2.cwl Branch/Commit ID: master |
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Transcripts annotation workflow
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https://github.com/mr-c/workflow-is-cwl.git
Path: workflows/TranscriptsAnnotation-wf.cwl Branch/Commit ID: fix_sbg_namespace |
