Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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blastp_wnode_naming
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https://github.com/ncbi/pgap.git
Path: task_types/tt_blastp_wnode_naming.cwl Branch/Commit ID: 7e875f77b615b4f7ebfb23a1da30eb216cc52919 |
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Run genomic CMsearch (5S rRNA)
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https://github.com/ncbi/pgap.git
Path: bacterial_noncoding/wf_gcmsearch.cwl Branch/Commit ID: 7e875f77b615b4f7ebfb23a1da30eb216cc52919 |
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BLAST against rRNA db
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https://github.com/ncbi/pgap.git
Path: bacterial_noncoding/wf_blastn.cwl Branch/Commit ID: 7e875f77b615b4f7ebfb23a1da30eb216cc52919 |
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protein_extract
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https://github.com/ncbi/pgap.git
Path: progs/protein_extract.cwl Branch/Commit ID: 7e875f77b615b4f7ebfb23a1da30eb216cc52919 |
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Detect DoCM variants
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/docm_germline.cwl Branch/Commit ID: 735be84cdea041fcc8bd8cbe5728b29ca3586a21 |
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Run tRNAScan
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https://github.com/ncbi/pgap.git
Path: bacterial_trna/wf_trnascan.cwl Branch/Commit ID: 7e875f77b615b4f7ebfb23a1da30eb216cc52919 |
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Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: 7e875f77b615b4f7ebfb23a1da30eb216cc52919 |
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gp_makeblastdb
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https://github.com/ncbi/pgap.git
Path: progs/gp_makeblastdb.cwl Branch/Commit ID: 7e875f77b615b4f7ebfb23a1da30eb216cc52919 |
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Varscan Workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: 735be84cdea041fcc8bd8cbe5728b29ca3586a21 |
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Run genomic CMsearch (Rfam rRNA)
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https://github.com/ncbi/pgap.git
Path: bacterial_ncrna/wf_gcmsearch.cwl Branch/Commit ID: 7e875f77b615b4f7ebfb23a1da30eb216cc52919 |
