Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Salmon quantification, FASTQ -> H5AD count matrix
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: steps/salmon-quantification.cwl Branch/Commit ID: 123d1bd3552c797f7f5c76ee6f0c69b6cf09ad16 |
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Create Genomic Collection for Bacterial Pipeline
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https://github.com/ncbi/pgap.git
Path: genomic_source/wf_genomic_source.cwl Branch/Commit ID: c009eeba7379efbbd37b8d5013a83f161f06939b |
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checkm
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https://github.com/ncbi/pgap.git
Path: checkm/wf_checkm.cwl Branch/Commit ID: ed27a47e80a85c76cb7285a78965d59537f79f10 |
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cond-wf-003.1_nojs.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/conditionals/cond-wf-003.1_nojs.cwl Branch/Commit ID: c7c97715b400ff2194aa29fc211d3401cea3a9bf |
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struct_output.cwl
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https://github.com/common-workflow-lab/wdl-cwl-translator.git
Path: wdl2cwl/tests/cwl_files/struct_output.cwl Branch/Commit ID: 471bf44b717b69b108fc6d13bc71fac55827d1dd |
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Alignment without BQSR
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_to_bqsr_nonhuman.cwl Branch/Commit ID: 046e980d131ebaf71f76599a749e2294c40c9d0d |
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ldv_linc_calibrator.cwl
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https://git.astron.nl/RD/LINC.git
Path: workflows/ldv_linc_calibrator.cwl Branch/Commit ID: b4356321a88504de89c13bb459dbbc625958626f |
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scatter GATK HaplotypeCaller over intervals
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: 92bdcd9fa879161834ecdb1c4c9ac7c46e940206 |
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lhcbreconstruct.cwl
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https://github.com/aldbr/dirac-cwl-proto.git
Path: test/workflows/lhcb/lhcbreconstruct.cwl Branch/Commit ID: e97b83d0d65a46042fa9b9fbb725b5bbed498665 |
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foreign_screening.cwl
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https://github.com/ncbi/pgap.git
Path: vecscreen/foreign_screening.cwl Branch/Commit ID: 4ee5718856e3e890949ac48b9a30b68e11ccdd11 |
