Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph allele-process-strain.cwl

https://github.com/datirium/workflows.git

Path: subworkflows/allele-process-strain.cwl

Branch/Commit ID: 00ced0fc44ceeb3495e891232e1000235e56ee6b
workflow graph kmer_cache_store

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_cache_store.cwl

Branch/Commit ID: b0ee40d34d233f1611c2e2c66b6d22a3b7deec05
workflow graph scatter-valuefrom-wf4.cwl#main

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/scatter-valuefrom-wf4.cwl

Branch/Commit ID: fc6ca8b1498926f705dcfde7ab0a365bd09a9675

Packed ID: main
workflow graph Single-cell Reference Indices

Single-cell Reference Indices Builds a Cell Ranger and Cell Ranger ARC compatible reference folders from the custom genome FASTA and gene GTF annotation files

 https://github.com/Barski-lab/sc-seq-analysis.git

Path: workflows/sc-ref-indices-wf.cwl

Branch/Commit ID: e70b7fab45e4bd2abfb7dab2b8b1f79ce904ac69
workflow graph RNA-seq (VCF) alelle specific pipeline for paired-end data

Allele specific RNA-Seq (using vcf) paired-end workflow

https://github.com/datirium/workflows.git

Path: workflows/allele-vcf-rnaseq-pe.cwl

Branch/Commit ID: c602e3cdd72ff904dd54d46ba2b5146eb1c57022
workflow graph filter-pcr-artifacts.cwl

DNase-seq - map - Filter PCR Artifacts

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/map/filter-pcr-artifacts.cwl

Branch/Commit ID: ffdc6d7b155fe301cd49b6e499097cce966159ef
workflow graph allele-process-reference.cwl

https://github.com/Barski-lab/workflows.git

Path: subworkflows/allele-process-reference.cwl

Branch/Commit ID: 877546bb89b793cc8830f8d803858706937a654b
workflow graph group-isoforms-batch.cwl

Workflow runs group-isoforms.cwl tool using scatter for isoforms_file input. genes_filename and common_tss_filename inputs are ignored.

https://github.com/datirium/workflows.git

Path: tools/group-isoforms-batch.cwl

Branch/Commit ID: 7fb8a1ebf8145791440bc2fed9c5f2d78a19d04c
workflow graph Build Bismark indices

Copy fasta_file file to the folder and run run bismark_genome_preparation script to prepare indices for Bismark Methylation Analysis. Bowtie2 aligner is used by default. The name of the output indices folder is equal to the genome input.

 https://github.com/datirium/workflows.git

Path: workflows/bismark-index.cwl

Branch/Commit ID: 2cad55523d1b4ee7fd9e64df0f6263c6545e4b0e
workflow graph xenbase-sra-to-fastq-pe.cwl

https://github.com/Barski-lab/workflows.git

Path: subworkflows/xenbase-sra-to-fastq-pe.cwl

Branch/Commit ID: 877546bb89b793cc8830f8d803858706937a654b