Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
sequence (bam or fastqs) to trimmed fastqs and HISAT alignments
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 25eab0390f6866ce491b44c89d9e0435d228ab6f |
|
|
|
atm-unified.cwl
|
https://github.com/E3SM-Project/e3sm_to_cmip.git
Path: scripts/cwl_workflows/atm-unified-eam/atm-unified.cwl Branch/Commit ID: bfc1b812e0de6a86c4bf482fa738c0010b2658f8 |
|
|
|
mutect parallel workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/mutect.cwl Branch/Commit ID: ef7f3345b352319ec22dffba26c79df033b141f9 |
|
|
|
wf_run_demonstrator.cwl
|
https://github.com/BAMresearch/ModelCalibration.git
Path: usecases/Concrete/workflow/wf_run_demonstrator.cwl Branch/Commit ID: 99e745fe3387450c4cc52c130d2d1eaef76eb18a |
|
|
|
Apply filters to VCF file
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/filter_vcf_nonhuman.cwl Branch/Commit ID: ef7f3345b352319ec22dffba26c79df033b141f9 |
|
|
|
Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)
|
https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass1.cwl Branch/Commit ID: 61eaea2f746c8a1fc2a2b731056b068e28ca4e20 |
|
|
|
Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)
|
https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass2.cwl Branch/Commit ID: 61eaea2f746c8a1fc2a2b731056b068e28ca4e20 |
|
|
|
strelka workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/strelka_and_post_processing.cwl Branch/Commit ID: ef7f3345b352319ec22dffba26c79df033b141f9 |
|
|
|
Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)
|
https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: 61eaea2f746c8a1fc2a2b731056b068e28ca4e20 |
|
|
|
Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)
|
https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass4.cwl Branch/Commit ID: 61eaea2f746c8a1fc2a2b731056b068e28ca4e20 |
