Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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blastp_wnode_naming
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https://github.com/ncbi/pgap.git
Path: task_types/tt_blastp_wnode_naming.cwl Branch/Commit ID: 4cd1fb565519fbe5f9c462acae01ff608c3784a3 |
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assemble.cwl
Assemble a set of reads using SKESA |
https://github.com/ncbi/pgap.git
Path: assemble.cwl Branch/Commit ID: 4cd1fb565519fbe5f9c462acae01ff608c3784a3 |
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umi duplex alignment fastq workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/alignment_umi_duplex.cwl Branch/Commit ID: c23dc7f113ca0b0a3127a5d6c696e98d4799460c |
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kmer_cache_retrieve
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: 4cd1fb565519fbe5f9c462acae01ff608c3784a3 |
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Run genomic CMsearch
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https://github.com/ncbi/pgap.git
Path: bacterial_noncoding/wf_gcmsearch.cwl Branch/Commit ID: 4cd1fb565519fbe5f9c462acae01ff608c3784a3 |
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tt_univec_wnode.cwl
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https://github.com/ncbi/pgap.git
Path: task_types/tt_univec_wnode.cwl Branch/Commit ID: 4cd1fb565519fbe5f9c462acae01ff608c3784a3 |
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bacterial_orthology
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https://github.com/ncbi/pgap.git
Path: bacterial_orthology/wf_bacterial_orthology.cwl Branch/Commit ID: 4cd1fb565519fbe5f9c462acae01ff608c3784a3 |
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WGS and MT analysis for fastq files
rna / protein - qc, preprocess, filter, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/wgs-fastq.workflow.cwl Branch/Commit ID: 963ca6a73a9f8879d57c08fa59548f98f28e755a |
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Genome conversion and annotation
Workflow for genome annotation from EMBL format |
https://git.wageningenur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_sapp_others.cwl Branch/Commit ID: master |
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workflow_demultiplexing.cwl
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https://git.wageningenur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_demultiplexing.cwl Branch/Commit ID: master |
