Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Nested workflow example

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/nested.cwl

Branch/Commit ID: 20d664eff23e59aa57908345bfdb1ceeab3438f2
workflow graph EMG pipeline v3.0 (paired end version)

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3-paired.cwl

Branch/Commit ID: ca6ca613f0d3728d9589a6ca6293e66dfde87bfb
workflow graph linc_calibrator.cwl

https://git.astron.nl/RD/LINC.git

Path: workflows/linc_calibrator.cwl

Branch/Commit ID: 8a697be0fa85795f7822146015edf963a5681ca7
workflow graph search.cwl#main

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/search.cwl

Branch/Commit ID: e59538cd9899a88d7e31e0f259bc56734f604383

Packed ID: main
workflow graph linc_target.cwl

https://git.astron.nl/RD/LINC.git

Path: workflows/linc_target.cwl

Branch/Commit ID: 8a697be0fa85795f7822146015edf963a5681ca7
workflow graph genomics-workspace-cds.cwl

https://github.com/nal-i5k/organism_onboarding.git

Path: flow_genomicsWorkspace/genomics-workspace-cds.cwl

Branch/Commit ID: 0ecf492419ddaa015f14a163381948c53b3deea6
workflow graph picard_markduplicates

Mark duplicates

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/picard_markduplicates.cwl

Branch/Commit ID: d2314468d2d2ec177d278899820de1cbfe8c8fb6
workflow graph 5S-from-tablehits.cwl

https://github.com/ebi-metagenomics/ebi-metagenomics-cwl.git

Path: tools/5S-from-tablehits.cwl

Branch/Commit ID: c34db66a79cec3b66a0f1be5e499eef88db5a9ed
workflow graph Genome conversion and annotation

Workflow for genome annotation from EMBL format

 https://git.wageningenur.nl/unlock/cwl.git

Path: cwl/workflows/workflow_sapp_others.cwl

Branch/Commit ID: b9097b82e6ab6f2c9496013ce4dd6877092956a0
workflow graph BAM to BEDPE

Comvert BAM to BEDPE and compress the output

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/File-formats/bamtobedpe-gzip.cwl

Branch/Commit ID: 3247592a89deafaa0d9c5910a1cb1d000ef9b098