Explore Workflows

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/qc_wgs.cwl

Branch/Commit ID: 6d03a918639a69ddf6a7b93fe9f72128ef37edc3

https://github.com/ncbi/pgap.git

Path: task_types/tt_fscr_calls_pass1.cwl

Branch/Commit ID: 85e33a80019f8a630cb59ec6663ada7deb83e453

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/qc_wgs_mouse.cwl

Branch/Commit ID: 6d03a918639a69ddf6a7b93fe9f72128ef37edc3

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/duplex_alignment.cwl

Branch/Commit ID: e7e888df9e7d44f036c4c7985e474016ee9e6525

Reverse the lines in a document, then sort those lines.

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/revsort_step_bad_schema.cwl

Branch/Commit ID: 0037b6d673437f220987916fea61d3832797095d

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines12-wf.cwl

Branch/Commit ID: 984ad48495f84d3a016cb41a2d1ce7b303248364

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: gdc-dnaseq-aln-cwl/gdc_dnaseq.bamfastq_align.workflow.cwl

Branch/Commit ID: 86f949778822efa7d95a1b2580bf4c7b5809a0bd

Simple 2 step workflow to check that workflow steps are independently picking up on the number of processes. First run the parallel get PIDs step (on the input num procs) then run (on a single proc) the line count. This should equal the input.

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/mpi_simple_wf.cwl

Branch/Commit ID: d5d86428e41f7e754a49e8d27e5abaee0762645e

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: bulk-pipeline.cwl

Branch/Commit ID: 8c435d7de36b94093c776d62e1b2093b2c886ba1

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/workflow_input_sf_expr_v1_2.cwl

Branch/Commit ID: 6a46105708870aa3cf97c8ba91884272b2857975