Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph tt_univec_wnode.cwl

https://github.com/ncbi/pgap.git

Path: task_types/tt_univec_wnode.cwl

Branch/Commit ID: 7f9cfcbda5998b164bd1d8f1f6006aefda0f47f3
workflow graph umi molecular alignment workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/molecular_qc.cwl

Branch/Commit ID: 4bc0a4577d626b65a4b44683e5a1ab2f7d7faf4c
workflow graph grepsort workflow

a workflow that performs grep followed by sort

 https://github.com/ResearchObject/runcrate.git

Path: tests/data/grepsort-run-1/snapshot/grepsort.cwl

Branch/Commit ID: f9b20fdd7e0b76738845b4eff3435b3a37fa049f
workflow graph fail-unconnected.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/fail-unconnected.cwl

Branch/Commit ID: 4feec74019b56dc5c51be905a208ff90797661de
workflow graph tt_fscr_calls_pass1

https://github.com/ncbi/pgap.git

Path: task_types/tt_fscr_calls_pass1.cwl

Branch/Commit ID: 45d134ce3d436c53637a2d83755e9b4613267e9f
workflow graph cache_asnb_entries

https://github.com/ncbi/pgap.git

Path: task_types/tt_cache_asnb_entries.cwl

Branch/Commit ID: 669166450aba26f3560c15960eeebdd0313a7f84
workflow graph blastp_wnode_struct

https://github.com/ncbi/pgap.git

Path: task_types/tt_blastp_wnode_struct.cwl

Branch/Commit ID: 45d134ce3d436c53637a2d83755e9b4613267e9f
workflow graph wf.cwl

https://github.com/ResearchObject/runcrate.git

Path: cwl/multisource/wf.cwl

Branch/Commit ID: f9b20fdd7e0b76738845b4eff3435b3a37fa049f
workflow graph autosubmit.cwl

An example workflow created using Autosubmit's basic a000 workflow as reference. The `platform.yml` is ignored as it contains only information about platforms (e.g. it could be given to a tool like Troika as-is). `expdef.yml` and `autosubmit.yml` basically provide CWL inputs. `jobs.yml` contains the steps of the CWL workflow, with their dependencies. In CWL dependencies are specified via inputs and outputs. When task A outputs a value X, and task B has an input of type A/X, then the dependency A -> B is created in CWl. This is different than Autosubmit, and needs some care to guarantee the correct order in the workflow graph of start dates, members, chunks, etc.

https://github.com/kinow/kinoshita.eti.br.git

Path: notes/autosubmit/autosubmit.cwl

Branch/Commit ID: 5fab4b3e06f18f82898cb252213f6292179a9956
workflow graph Africapolis.cwl#main

https://github.com/LoloGruber/fishnet.git

Path: cwl/africapolis/Africapolis.cwl

Branch/Commit ID: a52a1c2283359b96c3728cb248f15c40988a42bd

Packed ID: main