Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
Bacterial Annotation, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)
|
https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_2nd_pass.cwl Branch/Commit ID: 5d5c4b4ed6d6de42eda2c68aefcf738c201517fb |
|
|
|
Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)
|
https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_ab_initio_training.cwl Branch/Commit ID: 5d5c4b4ed6d6de42eda2c68aefcf738c201517fb |
|
|
|
checkm
|
https://github.com/ncbi/pgap.git
Path: checkm/wf_checkm.cwl Branch/Commit ID: 5d5c4b4ed6d6de42eda2c68aefcf738c201517fb |
|
|
|
Non-Coding Bacterial Genes
|
https://github.com/ncbi/pgap.git
Path: bacterial_noncoding/wf_bacterial_noncoding.cwl Branch/Commit ID: 5d5c4b4ed6d6de42eda2c68aefcf738c201517fb |
|
|
|
alignment_prep.cwl
|
https://github.com/uc-cdis/genomel_pipelines.git
Path: genomel/cwl/workflows/harmonization/alignment_prep.cwl Branch/Commit ID: 1595f2bc453663c9e71c1a2d60729f481921029e |
|
|
|
Per-region pindel
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: 6bfb64375e7ebb6eb40f463ede86d8deccdb9eff |
|
|
|
count-lines8-wf.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines8-wf.cwl Branch/Commit ID: bffea7fd5e864c5221c13a815d00d0a2fad178cc |
|
|
|
gcaccess_from_list
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_gcaccess_from_list.cwl Branch/Commit ID: 681555881cbdf95a1f4c29f6dc272eb6ca8e4d60 |
|
|
|
wgs alignment with qc
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/wgs_alignment.cwl Branch/Commit ID: d297528e53b6c1ecb69b1ab27b8e03323b4463ad |
|
|
|
exome alignment and somatic variant detection for cle purpose
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/somatic_exome_cle.cwl Branch/Commit ID: 39ac49f5d080bbb6bfa97246f46a5b621254f622 |
