Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph picard_markduplicates

Mark duplicates

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/picard_markduplicates.cwl

Branch/Commit ID: d2314468d2d2ec177d278899820de1cbfe8c8fb6
workflow graph 5S-from-tablehits.cwl

https://github.com/ebi-metagenomics/ebi-metagenomics-cwl.git

Path: tools/5S-from-tablehits.cwl

Branch/Commit ID: c34db66a79cec3b66a0f1be5e499eef88db5a9ed
workflow graph Genome conversion and annotation

Workflow for genome annotation from EMBL format

 https://git.wageningenur.nl/unlock/cwl.git

Path: cwl/workflows/workflow_sapp_others.cwl

Branch/Commit ID: b9097b82e6ab6f2c9496013ce4dd6877092956a0
workflow graph BAM to BEDPE

Comvert BAM to BEDPE and compress the output

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/File-formats/bamtobedpe-gzip.cwl

Branch/Commit ID: 3247592a89deafaa0d9c5910a1cb1d000ef9b098
workflow graph count-lines5-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines5-wf.cwl

Branch/Commit ID: fc6ca8b1498926f705dcfde7ab0a365bd09a9675
workflow graph samtools_view_sam2bam

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/samtools_view_sam2bam.cwl

Branch/Commit ID: d2314468d2d2ec177d278899820de1cbfe8c8fb6
workflow graph search.cwl#main

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/search.cwl

Branch/Commit ID: cb81b22abc52838823da9945f04d06739ab32fda

Packed ID: main
workflow graph FASTQ Vector Removal

This workflow convert fastq to multiple fasta files

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/File-formats/fastq-to-splitted-fasta.cwl

Branch/Commit ID: 433720e6ba8c2d85b15de3ffb9ce1236f08978a4
workflow graph combine_counts.cwl

Combines read counts (generated by the 01_mpileups workflow) from multiple files into one file.

https://github.com/ReddyLab/bird-workflow.git

Path: 02_combine_counts/combine_counts.cwl

Branch/Commit ID: 5e08b9b8a0323a1f4740a65bdb356e9b75074093
workflow graph bwa_index

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/bwa_index.cwl

Branch/Commit ID: d2314468d2d2ec177d278899820de1cbfe8c8fb6