Explore Workflows
View already parsed workflows here or click here to add your own
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count-lines10-wf.cwl
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![]() Path: cwltool/schemas/v1.0/v1.0/count-lines10-wf.cwl Branch/Commit ID: b3639a4c5075abc562b7f9b816be0d4f7d711703 |
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trim-rnaseq-se.cwl
Runs RNA-Seq BioWardrobe basic analysis with single-end data file. |
![]() Path: workflows/trim-rnaseq-se.cwl Branch/Commit ID: 5a92b026bd62fe1597de940088e8adeef6939d5a |
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echo-wf-default.cwl
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![]() Path: cwltool/schemas/v1.0/v1.0/echo-wf-default.cwl Branch/Commit ID: e414985ecf9a371c5834e76cdb12ef9619893276 |
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Add snv and indel bam-readcount files to a vcf
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![]() Path: definitions/subworkflows/vcf_readcount_annotator.cwl Branch/Commit ID: 26806d99f8e2a241715fd081e712d4e3763db5b8 |
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Subworkflow to allow calling different SV callers which require bam files as inputs
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![]() Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: 86fbeb95ef85111f3b4c6bc2bba8f06cef64e157 |
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basename-fields-test.cwl
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![]() Path: cwltool/schemas/v1.0/v1.0/basename-fields-test.cwl Branch/Commit ID: 7bfd77118cdc80dd7150115dd7a1a7ee6046f6fe |
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umi duplex alignment fastq workflow
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![]() Path: definitions/pipelines/umi_duplex_alignment.cwl Branch/Commit ID: 4ae14dd3a447c90022e3dfeb53fc05b8436e2775 |
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bgzip and index VCF
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![]() Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: 9ad798f18104eb4a9c6c118f42691b9f5d9efd19 |
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tt_hmmsearch_wnode.cwl
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![]() Path: task_types/tt_hmmsearch_wnode.cwl Branch/Commit ID: 5d5c4b4ed6d6de42eda2c68aefcf738c201517fb |
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merge_duprem_filter.cwl
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![]() Path: CWL/workflow_modules/merge_duprem_filter.cwl Branch/Commit ID: f6ad72e6aadbdb831921f3af81cd104ee2f1cd3a |