Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph allele-alignreads-se-pe.cwl

Workflow maps FASTQ files from `fastq_files` input into reference genome `reference_star_indices_folder` and insilico generated `insilico_star_indices_folder` genome (concatenated genome for both `strain1` and `strain2` strains). For both genomes STAR is run with `outFilterMultimapNmax` parameter set to 1 to discard all of the multimapped reads. For insilico genome SAM file is generated. Then it's splitted into two SAM files based on strain names and then sorted by coordinates into the BAM format. For reference genome output BAM file from STAR slignment is also coordinate sorted.

https://github.com/Barski-lab/workflows.git

Path: subworkflows/allele-alignreads-se-pe.cwl

Branch/Commit ID: 0a8a3a654518547047ca4c975795459ade904fe2
workflow graph output-arrays-int-wf.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/output-arrays-int-wf.cwl

Branch/Commit ID: 979083396fee912fca8ef778174216d317338a00
workflow graph SetPhotonDelay

Derive additional delay of photon arrival times at the photodetectors.

 https://github.com/gammasim/workflows.git

Path: workflows/SetPhotonDelay.cwl

Branch/Commit ID: main
workflow graph three_step_color.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/three_step_color.cwl

Branch/Commit ID: 6a10aa5ff43cd10c6895a98d8cef97472c823a3a
workflow graph default-dir5.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/default-dir5.cwl

Branch/Commit ID: 6a10aa5ff43cd10c6895a98d8cef97472c823a3a
workflow graph tt_fscr_calls_pass1

https://github.com/ncbi/pgap.git

Path: task_types/tt_fscr_calls_pass1.cwl

Branch/Commit ID: 96dbb414d287f4382e2d477fb1851aeaa5f14f2b
workflow graph Bisulfite alignment and QC

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/bisulfite.cwl

Branch/Commit ID: 767e3dc7448da5bc44e4817c4161f6e4530032e2
workflow graph 811-12.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/811-12.cwl

Branch/Commit ID: 9cda157cb4380e9d30dec29f0452c56d0c10d064
workflow graph personal_genome_input_wf.cwl

https://github.com/kids-first/kf-rnaseq-workflow.git

Path: workflow/personal_genome_input_wf.cwl

Branch/Commit ID: 3c8e721d47d68035e4d4f55fa0a2eede18c6e9da
workflow graph revsort.cwl

Reverse the lines in a document, then sort those lines.

 https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/revsort.cwl

Branch/Commit ID: eb3f25a9e9414a7dba394f7627e02e63d7f1418c