Explore Workflows

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/js-expr-req-wf.cwl

Branch/Commit ID: e59538cd9899a88d7e31e0f259bc56734f604383

Packed ID: wf

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/etl.cwl

Branch/Commit ID: 0495e3095182b2e1b4d6274833b3d2ce30347a4e

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/extract_readgroup_fastq_pe.cwl

Branch/Commit ID: 0495e3095182b2e1b4d6274833b3d2ce30347a4e

Final filtering

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/final_filtering.cwl

Branch/Commit ID: a4a3547b9790e99a58424a0dfcb4e467a7691d6a

This workflow compute library complexity

https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/File-formats/bedtools-bam-pbc.cwl

Branch/Commit ID: b8f18a03ffbd7d5b78a7f220686b81d539686e98

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3.cwl

Branch/Commit ID: 7bb76f33bf40b5cd2604001cac46f967a209c47f

CNV GRIDSS calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/cnv_gridss.cwl

Branch/Commit ID: a4a3547b9790e99a58424a0dfcb4e467a7691d6a

Workflow runs homer-make-tag-directory.cwl tool using scatter for the following inputs - bam_file - fragment_size - total_reads `dotproduct` is used as a `scatterMethod`, so one element will be taken from each array to construct each job: 1) bam_file[0] fragment_size[0] total_reads[0] 2) bam_file[1] fragment_size[1] total_reads[1] ... N) bam_file[N] fragment_size[N] total_reads[N] `bam_file`, `fragment_size` and `total_reads` arrays should have the identical order.

https://github.com/datirium/workflows.git

Path: subworkflows/heatmap-prepare.cwl

Branch/Commit ID: 6bf56698c6fe6e781723dea32bc922b91ef49cf3

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/samtools_sort.cwl

Branch/Commit ID: d2314468d2d2ec177d278899820de1cbfe8c8fb6

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3-paired.cwl

Branch/Commit ID: 3f85843d4a6debdabe96bc800bf2a4efdcda1ef3