Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
fp_filter workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/fp_filter.cwl Branch/Commit ID: 06d2440d115b446c299b4ce96e8812d2f8df86ec |
|
|
|
Subworkflow to allow calling different SV callers which require bam files as inputs
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: 2ae0a374fab650757cdae4391c8cbd32f02edf97 |
|
|
|
Detect Docm variants
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/docm_cle.cwl Branch/Commit ID: d3e4bf55753cd92f97537c7d701187ea92d1e5f0 |
|
|
|
bam to trimmed fastqs and HISAT alignments
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: bed420556091b7b8b45cf20a95e5947e1de9a416 |
|
|
|
Bisulfite alignment and QC
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/bisulfite.cwl Branch/Commit ID: c625e05eefb1754353c1bdfa46c01dc61e6233dd |
|
|
|
Subworkflow to allow calling different SV callers which require bam files as inputs
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: 742dbafb5fb103d8578f48a0576c14dd8dae3b2a |
|
|
|
EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
|
https://github.com/ebi-metagenomics/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-single.cwl Branch/Commit ID: c34db66a79cec3b66a0f1be5e499eef88db5a9ed |
|
|
|
Bisulfite alignment and QC
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/bisulfite.cwl Branch/Commit ID: 742dbafb5fb103d8578f48a0576c14dd8dae3b2a |
|
|
|
conflict-wf.cwl#collision
|
https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/conflict-wf.cwl Branch/Commit ID: fe164457f370c2dfec5156f6d6d45818d53cb871 Packed ID: collision |
|
|
|
Alignment without BQSR
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_to_bqsr_mouse.cwl Branch/Commit ID: e8b7759826df40b8bb821b40b15aea960a4951c4 |
